Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2423 ATGGATCCGAATGAGCTAAAACGCGTATTCCAAATGTTTGATAGGAACGGGGACGGTAGAATAACAAAGAAAGAACTAACAGATTCATTGGAGAATTTAGGAATCTTCATACCTGACAAAGAGTTAACACAAATGATTGAAAAGATCGATGTCAACGGAGACGGTTACGTGGATTTAGACGAATTTGGTGAGTTGTATCAATCCATCATGGAGGAAAAAGACGAAGAGGAAGACATGAGGGAGGCTTTCAATGTTTTTGATCAAAATGGCGACGGTTTCATCACCGTTGATGAGCTAAGAGTTGTTTTGTCATCTCTTGGTCTTAAACAAGGAAGAACCGTTGAGGAATGTAAGAAGATGATTATGAAGGTGGATGTTGATGGTGATGGTATGGTTAATTATAAGGAGTTTAAGCAAATGATGAAAGGAGGAGGATTCAGTGCTCTTAATTAA 453 0.3841 MDPNELKRVFQMFDRNGDGRITKKELTDSLENLGIFIPDKELTQMIEKIDVNGDGYVDLDEFGELYQSIMEEKDEEEDMREAFNVFDQNGDGFITVDELRVVLSSLGLKQGRTVEECKKMIMKVDVDGDGMVNYKEFKQMMKGGGFSALN* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2423 150 SUPERFAMILY EF-hand 4 144 IPR011992 -
Mal7g2423 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Mal7g2423 150 PRINTS Parvalbumin signature 65 83 - -
Mal7g2423 150 PRINTS Parvalbumin signature 124 137 - -
Mal7g2423 150 PRINTS Parvalbumin signature 87 103 - -
Mal7g2423 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Mal7g2423 150 SMART efh_1 116 144 IPR002048 GO:0005509
Mal7g2423 150 SMART efh_1 5 33 IPR002048 GO:0005509
Mal7g2423 150 SMART efh_1 78 106 IPR002048 GO:0005509
Mal7g2423 150 SMART efh_1 41 69 IPR002048 GO:0005509
Mal7g2423 150 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 149 - -
Mal7g2423 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Mal7g2423 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Mal7g2423 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Mal7g2423 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Mal7g2423 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 149 - -
Mal7g2423 150 Gene3D - 2 70 - -
Mal7g2423 150 Gene3D - 71 144 - -
Mal7g2423 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Mal7g2423 150 CDD EFh 82 142 IPR002048 GO:0005509
Mal7g2423 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Mal7g2423 150 CDD EFh 5 62 IPR002048 GO:0005509
Mal7g2423 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Mal7g2423 150 Pfam EF-hand domain pair 5 67 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2423 Mal-Chr7 84742424 84742876 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2423 1 149 EF-hand Containing Proteins AT1G05990 80.000 5.02e-80 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2423 K13448 - zju:107422102 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0456 4 4006402 4007064 Mal7g2423 7 84742424 84742876 PCT