Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0456 ATGCCAACTATTTTGCTTAGAATTTTCCTTTTATACAACGTTGTCAATTCATTTCTCATTAGTCTTGTTCCTAAGAAACTCAAAACCTTCTTCCCTCACTCTTGGTTCTCCCATCAAACCTTAACCAATCTAATCCAAACCACTACTACACCTTCTTCATCATCACCATCAAAAAGAGGTCTTGTTATTACCAAAACAATAACAATGGATCCAAATGAACTCAAACGTGTTTTCCAAATGTTTGACCGCAACAACGATGGCCGAATAACAAAGAAAGAGTTGAATGATTCCTTGGAGAATCTAGGAATCTTCATCCCTGACAAAGAGTTGAGTCAAATGATTGAGAAGATTGATGTGAACCGAGACGGGTGTGTGGATATTGAGGAATTCAAAGAGTTGTATGAGTCAATTATGAGTGAACGTGATGAAGAGGAGGAAGAAGATATGAGGGAAGCTTTCAACGTGTTTGATCAAAATGGAGATGGTTTCATTAGCGTTGATGAGTTGAGATCGGTTTTAGTGTCGTTGGGATTGAAACAAGGAAGAACAGTTGAAGATTGTAAGAAGATGATAGGGAATGTTGATGTTGATGGTGATGGTTTGGTTGATTATAAGGAGTTTAAGCAAATGATGAAAGGTGGTGGATTCACTGCTCTCAGTTAG 663 0.3786 MPTILLRIFLLYNVVNSFLISLVPKKLKTFFPHSWFSHQTLTNLIQTTTTPSSSSPSKRGLVITKTITMDPNELKRVFQMFDRNNDGRITKKELNDSLENLGIFIPDKELSQMIEKIDVNRDGCVDIEEFKELYESIMSERDEEEEEDMREAFNVFDQNGDGFISVDELRSVLVSLGLKQGRTVEDCKKMIGNVDVDGDGLVDYKEFKQMMKGGGFTALS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0456 220 Pfam EF-hand domain pair 146 212 IPR002048 GO:0005509
Mal4g0456 220 Pfam EF-hand domain pair 73 135 IPR002048 GO:0005509
Mal4g0456 220 CDD EFh 73 133 IPR002048 GO:0005509
Mal4g0456 220 ProSitePatterns EF-hand calcium-binding domain. 195 207 IPR018247 -
Mal4g0456 220 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Mal4g0456 220 SMART efh_1 186 214 IPR002048 GO:0005509
Mal4g0456 220 SMART efh_1 109 137 IPR002048 GO:0005509
Mal4g0456 220 SMART efh_1 148 176 IPR002048 GO:0005509
Mal4g0456 220 SMART efh_1 73 101 IPR002048 GO:0005509
Mal4g0456 220 CDD EFh 152 212 IPR002048 GO:0005509
Mal4g0456 220 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Mal4g0456 220 SUPERFAMILY EF-hand 72 213 IPR011992 -
Mal4g0456 220 ProSiteProfiles EF-hand calcium-binding domain profile. 144 179 IPR002048 GO:0005509
Mal4g0456 220 Coils Coil 127 147 - -
Mal4g0456 220 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Mal4g0456 220 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 218 - -
Mal4g0456 220 ProSiteProfiles EF-hand calcium-binding domain profile. 182 217 IPR002048 GO:0005509
Mal4g0456 220 Gene3D - 137 214 - -
Mal4g0456 220 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Mal4g0456 220 ProSitePatterns EF-hand calcium-binding domain. 157 169 IPR018247 -
Mal4g0456 220 Gene3D - 35 136 - -
Mal4g0456 220 PANTHER BNAA04G25000D PROTEIN 6 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0456 Mal-Chr4 4006402 4007064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0456 5 218 EF-hand Containing Proteins AT2G43290 63.134 1.67e-94 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0456 K13448 - gmx:100527487 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0456 4 4006402 4007064 Mal4g0456 4 4006402 4007064 ECH
Mal4g0456 4 4006402 4007064 Mal7g2423 7 84742424 84742876 PCT