Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal7g2409 | ATGTTGGTCATTCCCTCTTCATCTTCTCCATTTGTTTTGGGAAGTTGGAGAATCAAAACAGTGATCATGTCTCCAACAACACGTTCCTTTCACAAATCCCATCTCTCTAACAACCAACCCCCTTCCGTCAAACCCTCCGACGACTCCACCTCCACGTCCGGCGAAGTTCATGTCTATGTCAGGAGAAACAAAAAACCCAAAGGAATCACCACCACCACCACAAAACTTCAACAAAATCACAAAAAGCTTGGTTTGCCTGAAATTGAAGACTTTGCATACAGAGGACCAAATGAATTGACTCAATACAGAAAATCAGAAATGAGCTTAGATGTGACTACAACTGAAACTGAAGTTGTTTCTTCTACAACACATAGCATTGAATCACCTGCACACTGGGAAGAGACGCTTGAGGGTATTCGCAAAATGAGGTGTTCTGGAGATGCACCAGTAGACACTATGGGATGTGAGAAAGCTGGTTCTACATTGCCTCCTAAGGAAAGAAGATTCGCTGTCCTGGTATCTTCTCTTTTATCAAGCCAAACCAAAGATCATGTTAATCACGGAGCAATCCAACGTCTTCTTCAAAATGATCTACTTACTCCTGATGCAATCAACAATGCTGATGAAGAAACCATCAAAAAGTTGATTTACCCAGTTGGGTTTTATACAAGAAAAGCCACTAACTTGAAAAAAATTGCAAATATTTGTCTCATGAAGTATGCTGGAGACATACCTAGCACAATTGAGCAACTACTTTTACTTCCAGGCATAGGTCCTAAGATGGCTCATTTGGTCATGAATGTTGCATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTTCACCGCATTTGCAATCGGCTAGGTTGGGTGTCAAGATTGGGCACGAAACAGAAAACTTTGACACCTGAAGAGACAAGAGTGTCACTGCAACAGTGGCTTCCAAGGGAAGAATGGGATCCAATAAATCCTCTACTGGTAGGATTTGGACAGACAATTTGTACACCTCTAAGACCTCGTTGTGGAGAATGTAGTATAAGTCACTTGTGTCCATCCGCGTTCAAGGAAGCTGCAGGTTCAAGCCCAGTTTCCAAATCCACAAAGTCTGGAAGGAACAAGAAGCGCTAA | 1131 | 0.4226 | MLVIPSSSSPFVLGSWRIKTVIMSPTTRSFHKSHLSNNQPPSVKPSDDSTSTSGEVHVYVRRNKKPKGITTTTTKLQQNHKKLGLPEIEDFAYRGPNELTQYRKSEMSLDVTTTETEVVSSTTHSIESPAHWEETLEGIRKMRCSGDAPVDTMGCEKAGSTLPPKERRFAVLVSSLLSSQTKDHVNHGAIQRLLQNDLLTPDAINNADEETIKKLIYPVGFYTRKATNLKKIANICLMKYAGDIPSTIEQLLLLPGIGPKMAHLVMNVAWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTLTPEETRVSLQQWLPREEWDPINPLLVGFGQTICTPLRPRCGECSISHLCPSAFKEAAGSSPVSKSTKSGRNKKR* | 377 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal7g2409 | 376 | SMART | endo3end | 177 | 333 | IPR003265 | GO:0006284 | |
| Mal7g2409 | 376 | SUPERFAMILY | DNA-glycosylase | 142 | 364 | IPR011257 | GO:0003824|GO:0006281 | |
| Mal7g2409 | 376 | SMART | ccc3 | 334 | 354 | IPR003651 | GO:0051539 | |
| Mal7g2409 | 376 | Pfam | Helix-hairpin-helix motif | 240 | 267 | IPR000445 | GO:0003677 | |
| Mal7g2409 | 376 | ProSitePatterns | Endonuclease III iron-sulfur binding region signature. | 335 | 351 | IPR004035 | - | |
| Mal7g2409 | 376 | Gene3D | Hypothetical protein; domain 2 | 164 | 273 | - | - | |
| Mal7g2409 | 376 | PANTHER | ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC | 75 | 374 | - | - | |
| Mal7g2409 | 376 | Hamap | Endonuclease III-like protein 1 [NTHL1]. | 128 | 357 | IPR030841 | GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104 | |
| Mal7g2409 | 376 | Pfam | HhH-GPD superfamily base excision DNA repair protein | 173 | 301 | IPR003265 | GO:0006284 | |
| Mal7g2409 | 376 | ProSitePatterns | Endonuclease III family signature. | 242 | 271 | IPR004036 | - | |
| Mal7g2409 | 376 | Gene3D | - | 274 | 351 | IPR023170 | - | |
| Mal7g2409 | 376 | MobiDBLite | consensus disorder prediction | 30 | 54 | - | - | |
| Mal7g2409 | 376 | PANTHER | ENDONUCLEASE III-LIKE PROTEIN 1 | 75 | 374 | - | - | |
| Mal7g2409 | 376 | CDD | ENDO3c | 169 | 331 | IPR003265 | GO:0006284 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal7g2409 | Mal-Chr7 | 84561315 | 84566350 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal7g2409 | K10773 | - | gmx:100818398 | 508.449 |
Event-related genes