Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0462 ATGATTAAAAAGGTTAACAAAAGCATTTGGTTTTCAAGAATGCTAAACATTTGTTGTTGGTCCCTCCCGACAATGTTTCCTTTTGCTTATGTTTCGGTTTGTCTGGTTCGAACCAATGTCTCCTCTTCCATTACAAGAGCAACATGCTTCTCCTCCAAAACCAATTCTTATTTTCAATCAAAGAAGCACTTACCCCAAATTCAAGACAAAAAAAAGTTTGGTCTGACTAAGATTGAAGGATCTGCTGCATACACAGGAACAAATGAATTTGTTGAATTTAATGAATGTCCTGCCAATTGGGAAAATGTGCTTCAAGGGATTCGTGAAATGTGTTTTTCGATAGACACTACTGGAGATCGGGAAGATGCTGACATTCATCCTCCTAAGGAAAGAAGATTTGCCGTCCTGGCATCTTCTCTTTTATCGAGCCAAACTAAGGAGAATGTTACTCGTGGAGCAACTCAACGTCTTCGTCAAAACGGTCTTCTTACTGCTGATGCACTCAACAAAGCTGATGAAGAAACTATCAAGAAACTGATTTACCCTGTTGGGTTTTATATAAGAAAAGCTGGTAACCTGAAGAAAATTGCTGATATTTGTCTCACAAAGTATGATGGGGACATACCTAACTCAATTGAGGAGCTACTCTTACTTCCTGGCGTAGGTCCTAAGATTGCTCATTTGGTTATGATTATTGCATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATCTGCAATCGTCTTGGCTGGGTTTCGAGACCCGGCACAAAGCAGAGAACTTCAATACCCGAAGAAACAAGAAAGGCGCTGGAACGGTGGCTTCCGAGGGAAGAATGGGTTCCGATAAATTATCTTTTGGTAGGATTTGGAAGGACAATTTGTACTCCTTTACGGCCTCGCTGTGGAGAGTGTGGTGTAAGTAAGTTCTGCCCATCGGCGTTTAAGGAGACTTCAAGGTCATCTTCTAGGTCCAATAAGTCTCGATTGAACAAGAAGCCCCAGTCTAGCTAA 1026 0.4152 MIKKVNKSIWFSRMLNICCWSLPTMFPFAYVSVCLVRTNVSSSITRATCFSSKTNSYFQSKKHLPQIQDKKKFGLTKIEGSAAYTGTNEFVEFNECPANWENVLQGIREMCFSIDTTGDREDADIHPPKERRFAVLASSLLSSQTKENVTRGATQRLRQNGLLTADALNKADEETIKKLIYPVGFYIRKAGNLKKIADICLTKYDGDIPNSIEELLLLPGVGPKIAHLVMIIAWNNVQGICVDTHVHRICNRLGWVSRPGTKQRTSIPEETRKALERWLPREEWVPINYLLVGFGRTICTPLRPRCGECGVSKFCPSAFKETSRSSSRSNKSRLNKKPQSS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0462 341 SMART ccc3 298 318 IPR003651 GO:0051539
Mal4g0462 341 Gene3D Hypothetical protein; domain 2 121 231 - -
Mal4g0462 341 Pfam Helix-hairpin-helix motif 203 230 IPR000445 GO:0003677
Mal4g0462 341 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 299 315 IPR004035 -
Mal4g0462 341 Gene3D - 232 321 IPR023170 -
Mal4g0462 341 ProSitePatterns Endonuclease III family signature. 206 235 IPR004036 -
Mal4g0462 341 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 84 332 - -
Mal4g0462 341 Hamap Endonuclease III-like protein 1 [NTHL1]. 96 321 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Mal4g0462 341 CDD ENDO3c 133 295 IPR003265 GO:0006284
Mal4g0462 341 SMART endo3end 141 297 IPR003265 GO:0006284
Mal4g0462 341 Pfam HhH-GPD superfamily base excision DNA repair protein 138 263 IPR003265 GO:0006284
Mal4g0462 341 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 84 332 - -
Mal4g0462 341 SUPERFAMILY DNA-glycosylase 127 322 IPR011257 GO:0003824|GO:0006281
Mal4g0462 341 MobiDBLite consensus disorder prediction 320 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0462 Mal-Chr4 4065856 4068709 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0462 K10773 - gmx:100805799 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0462 4 4065856 4068709 Mal4g0462 4 4065856 4068709 ECH
Mal4g0462 4 4065856 4068709 Mal7g2409 7 84561315 84566350 PCT