Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2252 ATGGCGTCTCAAGCCAGCCTTCTCCTTCAAAAACAGCTCAAAGATCTTTGCAAAAACCCTGTCGATGGATTTTCTGCTGGGTTGGTTGATGAAAACAATATTTTTGAATGGAGTGTCACCGTAATTGGACCCCCTGATACTCTCTATGAGGGAGGATTTTTCAATGCCATCATGAGCTTTCCTTCCAATTACCCAAATAGTCCACCAACAGTGAAATTTACTTCAGAGATATGGCATCCTAATGTATACACTGATGGTCGGGTTTGCATATCAATCCTCCATCCTCCTGGCGACGATCCTAATGGTTACGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACCGTTGAGAGTATAGTATTGAGCATCATATCAATGCTTTCCAGTCCGAATGACGAATCTCCTGCAAATGTTGAAGCAGCAAAGATGTGGAGAGATAATAGAGATGAATTCCGGAAGAAGGTTGGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGA 501 0.4331 MASQASLLLQKQLKDLCKNPVDGFSAGLVDENNIFEWSVTVIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTSEIWHPNVYTDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKMWRDNRDEFRKKVGRCVRKSQEML* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2252 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Mal7g2252 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Mal7g2252 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Mal7g2252 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Mal7g2252 166 CDD UBCc 17 159 IPR000608 -
Mal7g2252 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Mal7g2252 166 SMART ubc_7 7 164 - -
Mal7g2252 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 166 - -
Mal7g2252 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2252 Mal-Chr7 79984079 79987103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2252 11 131 Miscellaneous Gene Families AT3G17000 31.746 6.50e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2252 K10575 - fve:101292976 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g2252 7 79984079 79987103 Mal7g2252 7 79984079 79987103 ECH
Mal4g0568 4 5678634 5682410 Mal7g2252 7 79984079 79987103 ECH
Mal4g0568 4 5678634 5682410 Mal7g2252 7 79984079 79987103 PCT