Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0568 ATGGCCTCCCAAGCAAGCCTCCTCCTTCAAAAACAGCTCAAAGATCTTTGTAAACACCCCGTCGATGGCTTTTCCGCTGGTTTAGTCGACGAAACCAACATTTTTGAATGGAGTGTAACCATAATTGGGCCACCAGATACACTTTATGAGGGAGGATTTTTCAATGCCATTATGAGCTTTCCACCGAACTACCCTAACAGTCCACCATCAGTGAAATTCACTTCAGAGATATGGCATCCCAATGTATATCCTGATGGGCGGGTTTGCATATCTATTCTTCATCCTCCTGGGGACGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGCATAGTGTTGAGTATCATATCGATGCTTTCTGGTCCTAATGATGAATCTCCGGCAAATGTTGAAGCTGCGGAGTGGAGAGACAGGAGAGACGATTTCAAGAAGAAGGTTAGCCGATGTGTGCGGAAGTCACAGGAAATGTTGTGA 498 0.4578 MASQASLLLQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAEWRDRRDDFKKKVSRCVRKSQEML* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0568 165 Gene3D Ubiquitin Conjugating Enzyme 2 165 IPR016135 -
Mal4g0568 165 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 163 IPR000608 -
Mal4g0568 165 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 165 - -
Mal4g0568 165 SMART ubc_7 7 163 - -
Mal4g0568 165 CDD UBCc 17 158 IPR000608 -
Mal4g0568 165 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Mal4g0568 165 Pfam Ubiquitin-conjugating enzyme 9 157 IPR000608 -
Mal4g0568 165 SUPERFAMILY UBC-like 3 161 IPR016135 -
Mal4g0568 165 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0568 Mal-Chr4 5678634 5682410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0568 1 127 Miscellaneous Gene Families AT1G17280 30.882 1.55e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0568 K10575 - gmx:100782328 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0568 4 5678634 5682410 Mal4g0568 4 5678634 5682410 ECH
Mal4g0568 4 5678634 5682410 Mal7g2252 7 79984079 79987103 ECH
Mal4g0568 4 5678634 5682410 Mal7g2252 7 79984079 79987103 PCT