Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4192 ATGGTCATGGACAAGGTGACTCAATATATACGTGTGTTCAATCACTTTGATGAAAATGGAGATGGAAAAATATCACCGTCGGAGTTGCGGCAATGTGTGGAGGCAATCGGGGTCAAGATGTCGAACGAGGAGGCGGAAGTGGCAGTGAAGCTTCTCGATTCAGACGGGGATGGGTTGGTTGGGTTGGATGATTTTGTGAAGTTTGTAGAGGGAGGGAAAGAGGAAGAGAAAGTGAATGACCTAAGAGAGGCTTTTAAAATGTATGAGATGGAAGGGAGTGGTTGCATCACACCAAAGAGTCTAAAGAGAATGCTTGGAAGATTGGGTGAGTGTAGAAGTGTAGATGAGTGTCAAGCTATGATTTCTCAATTTGACATTGATGGAGATGGGATGCTTAGTTTTGATGAATTTAGGACAATGATGCTTTAG 429 0.4336 MVMDKVTQYIRVFNHFDENGDGKISPSELRQCVEAIGVKMSNEEAEVAVKLLDSDGDGLVGLDDFVKFVEGGKEEEKVNDLREAFKMYEMEGSGCITPKSLKRMLGRLGECRSVDECQAMISQFDIDGDGMLSFDEFRTMML* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4192 142 Gene3D - 72 142 - -
Mal6g4192 142 ProSiteProfiles EF-hand calcium-binding domain profile. 112 142 IPR002048 GO:0005509
Mal6g4192 142 Pfam EF-hand domain pair 93 141 IPR002048 GO:0005509
Mal6g4192 142 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Mal6g4192 142 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Mal6g4192 142 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 142 - -
Mal6g4192 142 CDD EFh 11 69 IPR002048 GO:0005509
Mal6g4192 142 CDD EFh 80 141 IPR002048 GO:0005509
Mal6g4192 142 Gene3D - 2 71 - -
Mal6g4192 142 Pfam EF-hand domain pair 10 69 IPR002048 GO:0005509
Mal6g4192 142 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
Mal6g4192 142 SMART efh_1 44 72 IPR002048 GO:0005509
Mal6g4192 142 SMART efh_1 116 142 IPR002048 GO:0005509
Mal6g4192 142 SMART efh_1 8 36 IPR002048 GO:0005509
Mal6g4192 142 SMART efh_1 80 108 IPR002048 GO:0005509
Mal6g4192 142 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 142 - -
Mal6g4192 142 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Mal6g4192 142 SUPERFAMILY EF-hand 7 142 IPR011992 -
Mal6g4192 142 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Mal6g4192 142 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4192 Mal-Chr6 120665225 120665653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4192 4 141 EF-hand Containing Proteins AT1G76650 48.551 5.18e-43 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4192 K13448 - qsu:111991949 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g4192 6 120665225 120665653 Mal6g4192 6 120665225 120665653 ECH
Mal3g1007 3 41337276 41337710 Mal6g4192 6 120665225 120665653 PCT