Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1007 ATGATTGTTATGGACAAGGTAAGTCAATATGAGCGTGTGTTCAATCGCTTTGATGAAAATGGAGATGGGAAGATATCCCCGGCAGAGCTTCGACAATGTGTTGAGGCTATCGGTGATGAGAAGTTATCGGCGAAGGATGTAGAGGCGGCAGTGGCAATTATGGACTCGGATGGTGATGGATTGTTGGGGTTTGATGATTTTGTGAAGTTTGTGGAGGGAGTAAAAGAGGAAGATAAAGTGAATGACTTAAAAGAGGCTTTTAAGTTGTATGAGATGGATGGAAGTGGTTGCATCACACCTAGGAGTTTAAAGAGGATGCTTAGTAGGTTAGGTGATTCTAGAAGTATAGATGAGTGTCAACTTATGATATCTAAGTTTGATCTTGATGGGGATGGGAAAATCAGTTTTGATGAATTTAAGGTCATGATGTTGTAA 435 0.4046 MIVMDKVSQYERVFNRFDENGDGKISPAELRQCVEAIGDEKLSAKDVEAAVAIMDSDGDGLLGFDDFVKFVEGVKEEDKVNDLKEAFKLYEMDGSGCITPRSLKRMLSRLGDSRSIDECQLMISKFDLDGDGKISFDEFKVMML* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1007 144 CDD EFh 82 143 IPR002048 GO:0005509
Mal3g1007 144 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Mal3g1007 144 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Mal3g1007 144 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Mal3g1007 144 Gene3D - 2 75 - -
Mal3g1007 144 SUPERFAMILY EF-hand 7 144 IPR011992 -
Mal3g1007 144 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Mal3g1007 144 ProSitePatterns EF-hand calcium-binding domain. 18 30 IPR018247 -
Mal3g1007 144 ProSiteProfiles EF-hand calcium-binding domain profile. 114 144 IPR002048 GO:0005509
Mal3g1007 144 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Mal3g1007 144 Pfam EF-hand domain pair 81 143 IPR002048 GO:0005509
Mal3g1007 144 Gene3D - 76 144 - -
Mal3g1007 144 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Mal3g1007 144 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 5 144 - -
Mal3g1007 144 SMART efh_1 82 110 IPR002048 GO:0005509
Mal3g1007 144 SMART efh_1 46 74 IPR002048 GO:0005509
Mal3g1007 144 SMART efh_1 9 37 IPR002048 GO:0005509
Mal3g1007 144 SMART efh_1 118 144 IPR002048 GO:0005509
Mal3g1007 144 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 5 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1007 Mal-Chr3 41337276 41337710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1007 5 143 EF-hand Containing Proteins AT1G76650 50.360 7.69e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1007 K13448 - gmx:100784553 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g1007 3 41337276 41337710 Mal6g4192 6 120665225 120665653 PCT