Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3693 ATGGGGATACCTGGAATGAGCAATCAGAATAATGGACAAAAATGGTTAGGCATAACCGAGCCAATTTCATTGGCGGGACCAACTGATGATGATGTCACCAAGACACATGAACTTGAAAAGTACTTGCAAGGTGCTGGATTGTATGAGAGTCAGCAGGAGGCAGTTGGTAGGGAGGAAGTGCTTGGCAGACTAGACCAGATTGTGAAGATTTGGGTGAAAACCATTAGCAGGGCGAAGGGATTCAATGAACAAATGGTGCACGAAGCAAATGCCATGATTTTCACTTTTGGCTCCTATCGACTAGGGGTGCATGGTCCTGGTGCTGATATTGATACCCTTTGTGTGGGACCTAGACATGCAACCAGAGATGAAGATTTCTTTGGTGAGCTACAGAAGATGCTATCTGAGATGGAGGAAGTAACTGAATTGCACCCTGTGCCTGATGCTCATGTCCCTGTGATGAAATTCAAGTTCAATGGAGTTTCTGTAGATCTCCTGTATGCAAGATTGGCATTGTGGGTTATTCCTGAAGACTTAGATATATCACAGGAATCAATATTACAAAATGTAGATGAACAAACCGTTCTCAGTCTCAACGGATGTAGAGTAACTGATCAAGTCTTGCGTTTAGTTCCAAATATTCAGAATTTTCGCACAACATTGAGATTCATGAGGTTTTGGGCAAAGCGTCGTGGTGTTTATTCAAATGTTGCTGGTTTTCTTGGTGGTATAAACCTGGCATTGCTTGTTGGTCGAATATGCCAGCTTTATCCCAACGCACTTCCCAATATGTTGGTGTCGCGATTCTTTAGGGTATATACTCAGTGGCGATGGCCAAATCCTGTCATGCTTTGTGCTATTGAAGAAGGATCTCTTGGACTATCGGTTTGGGATCCTAGAAGAAATCCCAGAGATAGATATCATCTAATGCCTATAATTACTCCTGCTTATCCTTGCATGAACTCTACTTACAACGTGACAACAAGTACACTGCGTATTATGTCGGACGAGTTTAAGAGGGGAAGTGAAATATGTGAGGCTATGGAGGCTAGCAAGGCTGATTGGGATACTCTATTCGAGCCTTATCCATTTTTTGAAGCTTACAAGAATTACCTACAAATAGATATTACGGCAGAGAATCCAGACGACCTTAGACAATGGAAAGGATGGGTTGAGTCTCGTCTCCGCCAGTTGACATTGAAGATTGAGAAGTACACTTACGGTATGCTTCAGTGTCACCCGTATCCTGGCGAATTTTCAGACAAGTCTAGATCCTTCCACCAATGTTACTTTATGGGTCTGCAGCGTAAGCAAGGAGTTCCAGTAAATGAAGGTGAACAATTTGATATAAGGCTAACAGTAGAAGATTTCAAGCATTCTGTAAACTCGTACACTTCATGGAAACCTGGAATGGACATCCATGTCTCCCATGTAAAACGCCGTAACATACCAAACTTCATATTTCCTGGCGGCGTTCGACCTTCTGTCCCATCTAAAGTTAACGGTGAGAATAGACGAAGTTCAAAATCAAGGGTTGCTGGTCAAAGTCAATCTGAAAAGTCTCAAGGAGGTAAAGCGACTGTACTTGGAGCCGATGATGACAGGAAGAGAAAGCGATCGGAGGATAATAATAACTCAAGGGTTTCAAAGTCCTCTGCATCTCTATCCCCTCCCAATAGGGAAGTTCATGAAGATAGAACTCCTTTTAGTGCTACTAGTTCTTGCACTATGAAATTTGATGATTCTGAAGTCAATAGTATGGGTGATCAAAAGAGCGAGAAACCCTGTCTGAAATCGGTTGGCGAGATTCTTCCGGGTGATAGTGTAACCAATGGATCAGCGACGGATAACATACAACTTGATGTCCCTCATACATCTAACACTAAAGAAGAAGAACGACTAGCCATCGAGCAGATTATGTCTGGTCCGTATGAAGCGCATCAAACTTTGGCAGAACCTGATGAGCTCGAAGAAGATATGGGGTATAGAAATCAAGTCAAAGATAATGGTGGGAGTGTGAAAAGCAATAACTTTGAGTCTTCAAATCCAAATCTTGCTGCAGCGGAAGAGCAAGTTATTTCTAAGGAAACCGTATGTTCAACTCATTCATTCTCTAATGGAGGCTTGGAGGAGCTTGAGCTTACAGCACCATATTTATGTGGGATTCCTGCTCCTGTACCACAGAAGAAGCCTCTTATCAGGTTGAACTTCACATCCTTGGGGAAAGCAGTGGATAAAAGTTCTTAG 2247 0.4268 MGIPGMSNQNNGQKWLGITEPISLAGPTDDDVTKTHELEKYLQGAGLYESQQEAVGREEVLGRLDQIVKIWVKTISRAKGFNEQMVHEANAMIFTFGSYRLGVHGPGADIDTLCVGPRHATRDEDFFGELQKMLSEMEEVTELHPVPDAHVPVMKFKFNGVSVDLLYARLALWVIPEDLDISQESILQNVDEQTVLSLNGCRVTDQVLRLVPNIQNFRTTLRFMRFWAKRRGVYSNVAGFLGGINLALLVGRICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCAIEEGSLGLSVWDPRRNPRDRYHLMPIITPAYPCMNSTYNVTTSTLRIMSDEFKRGSEICEAMEASKADWDTLFEPYPFFEAYKNYLQIDITAENPDDLRQWKGWVESRLRQLTLKIEKYTYGMLQCHPYPGEFSDKSRSFHQCYFMGLQRKQGVPVNEGEQFDIRLTVEDFKHSVNSYTSWKPGMDIHVSHVKRRNIPNFIFPGGVRPSVPSKVNGENRRSSKSRVAGQSQSEKSQGGKATVLGADDDRKRKRSEDNNNSRVSKSSASLSPPNREVHEDRTPFSATSSCTMKFDDSEVNSMGDQKSEKPCLKSVGEILPGDSVTNGSATDNIQLDVPHTSNTKEEERLAIEQIMSGPYEAHQTLAEPDELEEDMGYRNQVKDNGGSVKSNNFESSNPNLAAAEEQVISKETVCSTHSFSNGGLEELELTAPYLCGIPAPVPQKKPLIRLNFTSLGKAVDKSS* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3693 748 PANTHER POLY A POLYMERASE 1 708 - -
Mal6g3693 748 SUPERFAMILY Nucleotidyltransferase 17 210 IPR043519 -
Mal6g3693 748 Pfam Poly(A) polymerase predicted RNA binding domain 424 494 IPR007010 GO:0003723|GO:0043631
Mal6g3693 748 Pfam Poly(A) polymerase predicted RNA binding domain 364 423 IPR007010 GO:0003723|GO:0043631
Mal6g3693 748 MobiDBLite consensus disorder prediction 529 545 - -
Mal6g3693 748 MobiDBLite consensus disorder prediction 487 593 - -
Mal6g3693 748 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Mal6g3693 748 CDD NT_PAP_TUTase 57 211 - -
Mal6g3693 748 Gene3D - 17 359 - -
Mal6g3693 748 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 708 - -
Mal6g3693 748 Pfam Nucleotidyltransferase domain 81 170 IPR002934 GO:0016779
Mal6g3693 748 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Mal6g3693 748 MobiDBLite consensus disorder prediction 568 583 - -
Mal6g3693 748 SUPERFAMILY PAP/OAS1 substrate-binding domain 212 361 - -
Mal6g3693 748 Gene3D Poly(A) polymerase predicted RNA binding domain 363 478 - -
Mal6g3693 748 MobiDBLite consensus disorder prediction 500 524 - -
Mal6g3693 748 Pfam Poly(A) polymerase central domain 17 361 IPR007012 GO:0004652|GO:0043631
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3693 Mal-Chr6 108111085 108117183 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3693 K14376 - gmx:100816915 1271.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0388 5 5921700 5927130 Mal6g3693 6 108111085 108117183 ECH
Mal6g3693 6 108111085 108117183 Mal6g3693 6 108111085 108117183 ECH