Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0388 ATGGGGAGCCCTGTGTTGAGCAACCGCAATATCGGGCAGCCGCAATGGTTAGGGATAACAGAGCCCATCTCGTTGAGTGGACCGACTGAATATGACATCGCCAAGACCCGTGAACTCGAGAAGTACTTGCAAGACGCCGGTTTGTATGAGAATCAGGAGGAAGCGATTTGCAGGGAGGAAGTGCTAGGCAGGCTAGACCAGATTGTGAAGATTTGGGTCAAAACCATTAGCCGTGCAAAAGGACTTAACGAACAGCTGGTCAAAGAAGCAAATGCCATGATTTTTACTTTTGGCTCCTACCGCCTAGGGGTGCATGGCCCTGGAGCAGATATTGACGTTCTTTGTGTGGGACCTAGACATGCAACCAGAAAGGAAGATTTCTTTGGTGAGCTGCATAAAATGCTATCTGAGATGCCAGAAGTGACAGAGTTGCACCCAGTGCCTGATGCTCATGTTCCAGTGATGAGTTTCAAGTTCAACGGTGTCTCTTTGGATCTCCTTTATGCACAATTATCTTTGTGGGTTATTCCTGAAGACTTGGATTTATCACAGGAAGTGATATTACAAAATGCAGACGAACAAACTGTTCGCAGTCTTAATGGTTGTAGAGTGACTGATCAAATCTTGTGTTTGGTTCCAAATATTCAGAATTTTCGTACGACATTGAGATGCATGAAGTTATGGGCTAAACGCCGTGGCGTTTATTCAAATGTTGCTGGTTTTCTTGGTGGTATAAACTGGGCATTGCTTGTTGGTCGAATATGCCAGCTATTTCCGAATGCACTGCCTAATATGTTGGTGTCTCGATTCTTTAGGGTATACACTCAGTGGCGTTGGCCAAACCCAGTAATGCTTTGTGCTATAAAAGAAGGATCTCTTGGACTTCAAGTTTGGGATCCTAGAAGAAATCCCAAGGATAAATACCATCTAATGCCAATAATTACTCCTGCTTATCCGTGCATGAATTCTAGTTACAATGTGTCATTAAGTACATTGCGTATTATGACGGAAGAGTTTCAGAGGGGAGATGAAATATGTGAGGCTATGGGGGCTAACAAGGCTGATTGGGATACTCTTTTTGAGTCCTATCCATTTTTTGAAGCTTATAAGAATTATTTGCGGATAGACATTTCAGCAGAGAATGTTGATGATCTTAGAAACTGGAAAGGCTGGGTTAAGTCTCGCTTGCGCCAGTTGACATTGAAGATTGAGAGGAACACTTATGGCATGCTTCAGTGTCATCCACATCCTGGTGATTTTTCAGACAAATCTAGACCTCTACACTGTTCTTACTTCATGGGTCTGCAACGTAAGCAAGGAGTTCCTGCCAATGAAGGCGGACAATTTGATATAAGATTAACTGTTGAAGAATTTAAGCATTCTGTCAATGCGTACATGCAATGGAAACCTGGCATGAATATATCCATCTCCCATGTGAAACGCCGCAATATACCTGCTTTTGCATTTCCGGGTGGAGTTCGGCCTAACTGCCCATCCAAAGTAACCTGGGTGAGTAAGCGACGTTCAGAGCTTAGGGTTTCCGGCCATGGTCAAGCAGAAAAGTCTCAAGAGGGTAAAGAATTAGGAGCAAACAATGATAAGAAGAGAAAGCATGCCGAAGATAGTGTGGATGACTTGAGAAATTCCCAGTCCTTTTCCTCTTTGCCTCCCTCTAGCAGGGATGTTCATGAAAATGGAAATCCTGTCAGCATTGCTAGTTCTTGCTCTGTGAAATGTGATGACACAGAACTCAATTGTATGAGTGAACAAAAAAGCAAGAAACCTGATTTGAATTTTTCAGTAGAGCGTCCTTCTGGGGATAGAGAGACCAATGGATCAGTGAAAAGCAACTCACAAATTATCCCTATACTTGCTGCTACTGATACATCTAGTTGTAAAGAAGCTGAAAATAATTCGGTAGTGGCAGCAGAACCTGTATTTTCTCAAAAGGAAAATAATTCAACTCATATATACTCTAATGGGGGCTTGGAGGAGCTTGAGCCTGCTGAGCTGACAGCTCCATTGTTGTGTGGAAATCCAGCACCAGTGCCACAACGGAAGCCTCTTATTAGGTTGAATTTCACCTCCTTAGGGAAAACTGCTGACAAAAGTTCTTAG 2118 0.432 MGSPVLSNRNIGQPQWLGITEPISLSGPTEYDIAKTRELEKYLQDAGLYENQEEAICREEVLGRLDQIVKIWVKTISRAKGLNEQLVKEANAMIFTFGSYRLGVHGPGADIDVLCVGPRHATRKEDFFGELHKMLSEMPEVTELHPVPDAHVPVMSFKFNGVSLDLLYAQLSLWVIPEDLDLSQEVILQNADEQTVRSLNGCRVTDQILCLVPNIQNFRTTLRCMKLWAKRRGVYSNVAGFLGGINWALLVGRICQLFPNALPNMLVSRFFRVYTQWRWPNPVMLCAIKEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSLSTLRIMTEEFQRGDEICEAMGANKADWDTLFESYPFFEAYKNYLRIDISAENVDDLRNWKGWVKSRLRQLTLKIERNTYGMLQCHPHPGDFSDKSRPLHCSYFMGLQRKQGVPANEGGQFDIRLTVEEFKHSVNAYMQWKPGMNISISHVKRRNIPAFAFPGGVRPNCPSKVTWVSKRRSELRVSGHGQAEKSQEGKELGANNDKKRKHAEDSVDDLRNSQSFSSLPPSSRDVHENGNPVSIASSCSVKCDDTELNCMSEQKSKKPDLNFSVERPSGDRETNGSVKSNSQIIPILAATDTSSCKEAENNSVVAAEPVFSQKENNSTHIYSNGGLEELEPAELTAPLLCGNPAPVPQRKPLIRLNFTSLGKTADKSS* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0388 705 SUPERFAMILY PAP/OAS1 substrate-binding domain 213 361 - -
Mal5g0388 705 Gene3D - 18 360 - -
Mal5g0388 705 MobiDBLite consensus disorder prediction 546 567 - -
Mal5g0388 705 PANTHER POLY A POLYMERASE 1 638 - -
Mal5g0388 705 Pfam Poly(A) polymerase predicted RNA binding domain 365 424 IPR007010 GO:0003723|GO:0043631
Mal5g0388 705 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 487 IPR011068 GO:0003723|GO:0016779|GO:0031123
Mal5g0388 705 MobiDBLite consensus disorder prediction 509 567 - -
Mal5g0388 705 MobiDBLite consensus disorder prediction 509 545 - -
Mal5g0388 705 Pfam Poly(A) polymerase central domain 18 361 IPR007012 GO:0004652|GO:0043631
Mal5g0388 705 SUPERFAMILY Nucleotidyltransferase 15 208 IPR043519 -
Mal5g0388 705 Gene3D Beta Polymerase, domain 2 50 206 IPR043519 -
Mal5g0388 705 CDD NT_PAP_TUTase 58 212 - -
Mal5g0388 705 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 638 - -
Mal5g0388 705 MobiDBLite consensus disorder prediction 588 603 - -
Mal5g0388 705 Gene3D Poly(A) polymerase predicted RNA binding domain 364 479 - -
Mal5g0388 705 MobiDBLite consensus disorder prediction 588 615 - -
Mal5g0388 705 Pfam Nucleotidyltransferase domain 83 157 IPR002934 GO:0016779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0388 Mal-Chr5 5921700 5927130 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0388 K14376 - gmx:100816915 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0388 5 5921700 5927130 Mal6g3693 6 108111085 108117183 ECH
Mal5g0388 5 5921700 5927130 Mal5g0388 5 5921700 5927130 ECH