Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2848 ATGGGAAATTCTTTTGGCTGTTCAGCTTCTGGTGAGAGGTTGGTATCTGCAGCAAGAGATGGTGATTTGGTTGAAGCAAAAATGCTTTTGGAATTCAATCCTTGTCTTGCTAAATACTCAACCTTTGGTGGTCTTAATTCACCTCTTCATTTTGCAGCTTCTAAGGGTCATAATGAGATTGTGGCATTGTTGCTTGAGAAAGGAGCTGATGTGAATTCAAGAAATTATTGTGGGCAGACAGCTTTGATGCAAGCTTGTAGACATGGTCATTGGGAAGTTGTACAAACCCTTGTGCTCTACAAATGCAATGTTACGAAAGCTGATTATCTCAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTCAGTGGGCATGTAAGATGCATTAGACTTGTTGTGGCGGACTTCGTTCCAAGTGCTCCTTATGAAACTCTTCATGCTCGCGTGGATACTGATGTTGGTGATGGATCAAATACGAAAAGAAAAAACGAACAAAGTGAGTTGTCCAAGTTTGTAAACAAGACAGCAGATGCAGGTATTACTGCACTTCATATGGCTGCGTTGAACGGGTTTTTCGATTGTGTGCAACTGCTACTTGATCTTAATGCAAATGCATCAGCTGCAACATATCATTATGGGACATCAATGGATTTAATAGGGGCCGGAAGCACTCCATTGCATTATGCTGCTTGCGGTGGAAATTTAAAATGCTGTCAGATCCTCCTTGCAAAAGGCGCAACTCGCATGGCTTTGAACTGCAATGGGTGGCTTCCACTTGATGTTGCTAGGATGTGGGGGCGTCACTGGCTTGAACCGTTGTTGGCACCGAGTTCTGATACCATCATATCATCATTCCCTACTTCAAGTTATTTGTCGTTGCCTCTCATGAGTGTGCTCAACATAGCCAGGGAATGTGGATTGCATTCATCTACGACCTCCTCTAATGAGATCGACTTCTGTGCTGTCTGCCTCGAGAGGCCATGTTCAGTGGCAGCAGAAGGATGTATGCATGAGCTTTGTGTTAGATGTGCACTCTATCTTTGCTCTACAGCCAATGTTTCTTCTGAAATGAGTGGCCCTCCTGGTTCTATCCCTTGTCCCCTTTGTCGACACGGAATTATCTCGTTCGTGAAGTTACCAAGTTTCCAACCAAAAGAAAATAAATTGCACGCGTCTCTCAGCATGTGTACACCATGCATACAGCATCCACGTGAGATAGATCAATCCTCTCTTTCTCATAATACATCGGAAATTCGAAGAAACCGGGTTGCTTCTGTTTCTTCTGAGATGCTTTGTCCTGTCACCTGTACACCATTTCCATCTGTAGCGATTCCTCTATGTACTTGCAATGATGGCCCTTGTCCGCCATTTGAACCCCGTGAAGATGAATCACAAGATGAATCGCCTCGTCACTCACAAGCTTCAACAACGGATCAGGACAAAATGGAAGGACCAAAACTGGTGAAAACAACATGTTCAAGTATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGAATCAATGCAATTCAGAAATAAATGCTTGA 1542 0.439 MGNSFGCSASGERLVSAARDGDLVEAKMLLEFNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLEKGADVNSRNYCGQTALMQACRHGHWEVVQTLVLYKCNVTKADYLSGRTALHFAAVSGHVRCIRLVVADFVPSAPYETLHARVDTDVGDGSNTKRKNEQSELSKFVNKTADAGITALHMAALNGFFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLAKGATRMALNCNGWLPLDVARMWGRHWLEPLLAPSSDTIISSFPTSSYLSLPLMSVLNIARECGLHSSTTSSNEIDFCAVCLERPCSVAAEGCMHELCVRCALYLCSTANVSSEMSGPPGSIPCPLCRHGIISFVKLPSFQPKENKLHASLSMCTPCIQHPREIDQSSLSHNTSEIRRNRVASVSSEMLCPVTCTPFPSVAIPLCTCNDGPCPPFEPREDESQDESPRHSQASTTDQDKMEGPKLVKTTCSSMFWGRRSCSRENQCNSEINA* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2848 513 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Mal6g2848 513 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Mal6g2848 513 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Mal6g2848 513 Gene3D - 155 270 IPR036770 -
Mal6g2848 513 PANTHER HOMEOBOX PROTEIN WARIAI 1 513 - -
Mal6g2848 513 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Mal6g2848 513 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Mal6g2848 513 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Mal6g2848 513 SMART ANK_2a 177 206 IPR002110 GO:0005515
Mal6g2848 513 SMART ANK_2a 111 141 IPR002110 GO:0005515
Mal6g2848 513 SMART ANK_2a 44 73 IPR002110 GO:0005515
Mal6g2848 513 SMART ANK_2a 77 106 IPR002110 GO:0005515
Mal6g2848 513 SMART ANK_2a 220 252 IPR002110 GO:0005515
Mal6g2848 513 ProSiteProfiles Ankyrin repeat region circular profile. 220 245 - -
Mal6g2848 513 Gene3D - 4 154 IPR036770 -
Mal6g2848 513 Pfam Ankyrin repeats (3 copies) 182 266 IPR002110 GO:0005515
Mal6g2848 513 MobiDBLite consensus disorder prediction 457 486 - -
Mal6g2848 513 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Mal6g2848 513 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Mal6g2848 513 MobiDBLite consensus disorder prediction 457 484 - -
Mal6g2848 513 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Mal6g2848 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 389 IPR013083 -
Mal6g2848 513 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Mal6g2848 513 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Mal6g2848 513 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 513 - -
Mal6g2848 513 SUPERFAMILY RING/U-box 318 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2848 Mal-Chr6 75700813 75706655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2848 17 273 Miscellaneous Gene Families AT5G02620 27.308 1.30e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2848 K19044 - gmx:100812809 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2848 6 75700813 75706655 Mal6g2848 6 75700813 75706655 ECH
Mal6g2848 6 75700813 75706655 Mal1g2007 1 26360912 26364781 PCT