Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2007 ATGGGAAATTCTTTCGGATGTTCAGCCTCCGGCGAGAGACTGGTATCGGCGGCGAGGGACGGTGACCTTGTGGAAGCAAAGATGCTTTTGAATTGTAACCCCTATCTTGCTAAATACTCCACTTTTGGTGGTCTTAATTCTCCTCTTCATTTTGCATCTGCAAAGGGTCATAACGAGATTGTTGCATTGTTGCTTGAGAATGGAGCTGATGTTAATTCAAGAAATTATTCTGGCCAGACGGCATTGATGCAAGCTTGTAGATATGGCCATTGGGAAGTTGTACAAACACTTTTACTCTTCAGATGCAATGTTATGAGAGCTGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCGATGAACGGGCATGTAAGATGTATTAGACTTGTTGTGGCCGACTTTGTTCCAAGTGCTCCTTACGATGTAATACATGCTCGCTCAGATGGTGACAGGGGTGGTGGATCAGATGTGAAAGGCAAACATGAACAAAGTGCCCTGTCCAAGTTTGTTAATAAGACAGCTGATGGTGGTATCACTGCCCTTCACATGGCTTCATTAAATGGGTATTTTGATTGTGTGCAACTGCTACTTGATCTTAATGCGAATATGTCTTCTGTGACATTTCATTACGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCTTTGCATTATGCTACTTGTGGGGGAAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCAAGTCGGATGGCTTTGAATTGCAACGGGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACCGTTGCTGGCACCCAGTTCTGATGCCGTAACACCGTCCTTCCCTCATTCAAATTACTTGTCCTTGCCTCTCATGAGTGTTCTCAACATAGCCAGAGAGTATGGATTGCGATCATCTACAACTTCCTCTGATGAGATTGAATTTTGTGCTGTATGCCTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGGTGTGGACATGAACTTTGTGTGAGATGTGCGCTCTATCTTTGCTCAACAAGCAACGTTTCTTCTGAAATGCTTGGCCCTCCTGGCTCTATCCCTTGTCCCCTTTGTAGACATGGAATTGTCTCTTTTGTCAAGTTGCCAGGTTCCCAAGCAAAAGAAAATAAATTACATGTGTCTCTTGGCCTCTGCACTCCATGCATGTTACATCCACGCGACAAAGATCAGCCATCTCTTTCTCACACACCAGAGATTCAAAGAAACTGTGTTGATTCTGTTCCTTCAGAGTTACTCTGTCCCGTTACATGTAGTCCATTTCCATCTATGGCAATACCTCTATGCACCTGCAACGAAGGTTCTTGTCCATCATTTGAACCACGAGATGTAGAAACTAGAGACGAATCACCTCGTCACTCACAGACATCAACAACGGATCGGGATAAAATTGAAGGGCCGAGACTGGATAAAACAACTTGCTCGAACATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCGGAAATAAACGTTTGA 1539 0.447 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPYLAKYSTFGGLNSPLHFASAKGHNEIVALLLENGADVNSRNYSGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAMNGHVRCIRLVVADFVPSAPYDVIHARSDGDRGGGSDVKGKHEQSALSKFVNKTADGGITALHMASLNGYFDCVQLLLDLNANMSSVTFHYGTSMDLIGAGSTPLHYATCGGNLKCCQILLARGASRMALNCNGWLPLDIARMWGRHWLEPLLAPSSDAVTPSFPHSNYLSLPLMSVLNIAREYGLRSSTTSSDEIEFCAVCLERPCSVAAEGCGHELCVRCALYLCSTSNVSSEMLGPPGSIPCPLCRHGIVSFVKLPGSQAKENKLHVSLGLCTPCMLHPRDKDQPSLSHTPEIQRNCVDSVPSELLCPVTCSPFPSMAIPLCTCNEGSCPSFEPRDVETRDESPRHSQTSTTDRDKIEGPRLDKTTCSNMFWGRRSCSREHQCNSEINV* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2007 512 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515
Mal1g2007 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Mal1g2007 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Mal1g2007 512 SMART ANK_2a 111 142 IPR002110 GO:0005515
Mal1g2007 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Mal1g2007 512 SMART ANK_2a 220 249 IPR002110 GO:0005515
Mal1g2007 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Mal1g2007 512 Gene3D - 147 269 IPR036770 -
Mal1g2007 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 391 IPR013083 -
Mal1g2007 512 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Mal1g2007 512 Pfam Ankyrin repeat 178 205 IPR002110 GO:0005515
Mal1g2007 512 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Mal1g2007 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Mal1g2007 512 PANTHER HOMEOBOX PROTEIN WARIAI 1 511 - -
Mal1g2007 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Mal1g2007 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Mal1g2007 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Mal1g2007 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Mal1g2007 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Mal1g2007 512 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Mal1g2007 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Mal1g2007 512 Pfam Ankyrin repeats (3 copies) 213 266 IPR002110 GO:0005515
Mal1g2007 512 MobiDBLite consensus disorder prediction 457 484 - -
Mal1g2007 512 Gene3D - 4 146 IPR036770 -
Mal1g2007 512 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 511 - -
Mal1g2007 512 SUPERFAMILY RING/U-box 315 375 - -
Mal1g2007 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Mal1g2007 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2007 Mal-Chr1 26360912 26364781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2007 14 307 Miscellaneous Gene Families AT2G31820 27.184 4.89e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2007 K19044 - gmx:100785638 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2007 1 26360912 26364781 Mal1g2007 1 26360912 26364781 ECH
Mal6g2848 6 75700813 75706655 Mal1g2007 1 26360912 26364781 PCT