Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2101 ATGGATGCACCCATTCTCCAATTAACCTCATTTTCTCTCACAAAACCCAACACAGAAACAACAACACTTTTACCTTTACCTCATCTCCTTTCTCTCATACCCAAATGCACCACTCTCACAGAGCTCAAGCAAATTCAAGCTTACACCATCAAAACCCATCACCAAAACAACACCAATGTCATGACAAAGTTCATAAATTTCTGCACTTCCAACCCATCAAAAGCTTCCATGGAACATGCACACCAACTGTTTGATCAAGTTACTCAACCAAATATTGTCCTTTTCAACACTATGGCACGTGGGTATGCTCGGTTTAATGACCCGCTTCGAGCAATGATTCTGTTTTCTAATGTTAAGGCTTTGGAAGAAGGGAAACAATTGCATTGTTTTGCTGTGAAACTTGGGGTAAGTGATAATATGTATGTTGTTCCGACGCTTATTAATATGTATACTGCTTGTGGTGACATTGATGCTGCTAGAAGGGTTTTTGATAAGATTGATGAACCTTGTGTTGTTGCGTATAATGCTATTATAATGAGTTTGGCTAGGAATAGTCAGGTTAATGAGGCATTGGCTTTGTTTAGAGAGTTGCAGGAGAGTGGTCTTAAGCCAACTGATGTTACCATGCTTGTTGTGCTTTCGTCGTGTGCTTTGCTTGGATCGTTGGATTTGGGGAGGTGGATGCATGAGTATGTTAAGAAGAACGGGTTTGATCGATATGTGAAGGTAAATACAGCTCTTATTGATATGTATGCTAAATGTGGGAGTTTGGATGATGCTGTTAATGTGTTTAGAGACATGCCTAAGAGAGATACACAGGCGTGGTCAGCGATAATCATTGCATATGCAACACATGGGGATGGTTTCCAAGCAATTTCAATGTTAAAAGAAATGAAGAAGGAAAAAGTGCAGCCTGATGAGATAACTTTTTTAGGTATATTGTATGCATGTAGTCACAATGGATTGGTAGAAGAAGGTTTTGAATATTTTCATAGTATGACGAATGAGTATGGGATTGTTCCTAGTATCAAACATTATGGGTGTATGGTGGATTTGCTTGGTCGAGCTGGACGATTGGATGAAGCCTATAAATTCATAGATGAATTACCGATCAAGCCGACACCGATTCTTTGGCGGACGCTGCTATCTGCTTGTAGTACTCATGGCAATGTTGAAATGGGAAAGCGAGTAATTGAGAGGATATTTGAATTGGATGGTTCCCATGGTGGGGATTATGTTATTTTTTCGAACTTGTGTGCAAGATATGGAAAATGGGATGACGTGAACCACCTACGGAAAACAATGATAGACAAAGGAGCGGTGAAAATTCCTGGTTGTAGCTCCATAGAGGTCAACAATGTCGTGCATGAGTTCTTCGCTGGGGATGGAGTTCATTCGACTTCTACCACGTTGCACCGTGCACTTGACGAGTTGGTCAAGGAATTGAAGTATGCTGGGTATGTACCTGACACATCACTAGTCTTTCATGCAGACATGGAAGATGAAGAGAAAGAAATTATTCTTCGATATCACAGTGAAAAATTGGCCATTACGTTTGGACTACTGAATACTCCACCTGGAACAACAATTCGTGTGGTCAAGAACCTTAGAGTATGTCGAGATTGCCATAATGCTGCTAAATTTATATCATTGATTTTTGGTAGGCAAATTATTCTTAGAGATGTTCAGCGATTTCACCATTTCAAGGATGGGAAATGCTCTTGTGGTGATTACTGGTAG 1740 0.4023 MDAPILQLTSFSLTKPNTETTTLLPLPHLLSLIPKCTTLTELKQIQAYTIKTHHQNNTNVMTKFINFCTSNPSKASMEHAHQLFDQVTQPNIVLFNTMARGYARFNDPLRAMILFSNVKALEEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDAARRVFDKIDEPCVVAYNAIIMSLARNSQVNEALALFRELQESGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKNGFDRYVKVNTALIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIIAYATHGDGFQAISMLKEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHSMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDGSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGDGVHSTSTTLHRALDELVKELKYAGYVPDTSLVFHADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2101 579 SUPERFAMILY TPR-like 235 409 IPR011990 GO:0005515
Mal6g2101 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Mal6g2101 579 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Mal6g2101 579 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Mal6g2101 579 TIGRFAM PPR: pentatricopeptide repeat domain 245 271 IPR002885 -
Mal6g2101 579 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Mal6g2101 579 Gene3D Tetratricopeptide repeat domain 36 118 IPR011990 GO:0005515
Mal6g2101 579 PANTHER BNAA02G26650D PROTEIN 120 565 - -
Mal6g2101 579 Pfam PPR repeat 346 369 IPR002885 -
Mal6g2101 579 Pfam PPR repeat 145 166 IPR002885 -
Mal6g2101 579 Pfam PPR repeat 93 116 IPR002885 -
Mal6g2101 579 Pfam PPR repeat 245 270 IPR002885 -
Mal6g2101 579 Pfam DYW family of nucleic acid deaminases 486 579 IPR032867 GO:0008270
Mal6g2101 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Mal6g2101 579 PANTHER BNAA02G26650D PROTEIN 22 119 - -
Mal6g2101 579 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 120 565 - -
Mal6g2101 579 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 22 119 - -
Mal6g2101 579 Pfam E motif 388 450 IPR046848 -
Mal6g2101 579 Pfam PPR repeat family 271 317 IPR002885 -
Mal6g2101 579 Pfam PPR repeat family 169 216 IPR002885 -
Mal6g2101 579 Gene3D Tetratricopeptide repeat domain 119 243 IPR011990 GO:0005515
Mal6g2101 579 Gene3D Tetratricopeptide repeat domain 244 481 IPR011990 GO:0005515
Mal6g2101 579 SUPERFAMILY TPR-like 46 265 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2101 Mal-Chr6 48822128 48823933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2101 29 579 Glycoside Hydrolase AT3G49170 37.005 2.89e-130 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2101 - - gmx:100817794 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2101 6 48822128 48823933 Mal6g2101 6 48822128 48823933 ECH
Mal6g2101 6 48822128 48823933 Mal5g4254 5 113582004 113583962 PCT