Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4254 ATGGCACTAGCTTTGTCCTCATGCTCAAACCGTTTTCTTCTCACCGCAACCAATCTTCAATCTCCCTCTTATTTCACTTCCACCATTGCCATTCATCTCCATCACTACAATACAATTCCTCAACCATATCAACAATACCAACAAAAACCTTCACCCAAGCTAGTGCCTTTACCTCTCTACAAACAAATTCAACCAACACCCATTTCACATTTCTCCCTAACCCACAAAGAATCCATAATTTCTACCATAAAATCTATTAACCATACCACCCATTTGCACCAAATCCATGCTCACATTCTCACAACAACCCTCGTTCAAGACTCTGCAGTTTCTCACCACTTCTTATGCCGTGTAGCTCTCTCTGGCCCATTGCAAAACCCCACCTATTCTCAACGTTTCTTTGAGCAAATCAACCACCCTTTTGTTTCCCATTACAACACCATGATCAGAGCTTATTCCTTCAGCGACTCACCTCAAAAGGCTCTTTTTTTATATCGAGATATGAGAAGAAGAGGCGTTGCTGCGAACCCTTTATCGTCTTCCTTTGCTGTTAAGTCTTGTATAAGATTTTTGTATCTTCTTGGAGGGGTTCAGGTTCATTGTAATATTTCCAAAGATGGGCATCAATCAGATACGCTTTTGCTCACTGCTCTCATGGACTTGTATTCACAATGTCAGAGATGTGATGATGCATGTAAGGTGTTTGATGAGATGCCTCACAAGGATACTGTTGCTTGGAATGTGATGATCTCTTGTTTTATTCGAAATAATCGGACTCGGGATGCTTTGAGCTTGTTTGATGTTATGCAGACCGAAAGGTATGAATGTGAACCGGATGATGTTACTTGTTTACTTCTTCTTCAAGCTTGTGCTCGTTTGAATTCGTTGGAGTTTGGTGAACGGATTCATAGTTATATTATGGAACATGGCTATGGGGGTGCTCTCAATTTGTCTAATTCTCTCATAACAATGTATTCGCGGTGTGGTTGTTTAGACAAGGCTTATGAGGTGTTTAAGGGATTGAAGAATAAAAGTGTTGTTTCTTGGAGTGCAATGATATCTGGTTTGGCAGTGAATGGATATGGAAGAGAAGCTATTGAAGCATTTGAAGAGATGCAGAGAAATGGTATTCAGCCTGATGATCATACTTTCACGGGCGTCCTTTCTGCTTGCAGTCATTCTGGATTGTTAGATGAGGGAGTGTCGTTTTTTGACCGAATGATCTCAGAGTTTCGGGTAACCCCAGCCGTCCACCATTATGGCTGCATTGTTGATCTCTTGGGCCGTGCTGGCTTAGTTGATAAGGCCTATAAGCTTATTACGTCGATGGAGGTAAAGCCAGATTCCACAGTGTGGAGGACCTTGCTTGGTGCTTGCAGAATTCATGGTCATCTTACACTCGGTGAACGAGTAATTGAACATTTGATTGAATTGAAAGGTCAAGAAGCTGGAGATTATGTTTTGCTTCTGAATCTTTATTCGTCAGCTGGACATTGGGAAAAGGTAGCAGAAGTGAGAAAACTAATGAGAGAAAAATCAATCCAAACCACACCTGGTTGTTGCACAATTGAACTGAAAGGAGTTGTACATGAGTTTGTTGTGGATGATGTTTCACATTCAAGAAAAGTTGAAATTTATCGCACATTGGATGAGATTAATAAGCAGCTGAAGATAGCTGGTTATGTTGTTGAACTTTCATCTGAACTACATAAGATGGATGACAAAGGAAAAGGGTATGCACTCTCTTATCATAGTGAAAAACTGGCTATTGCTTTTGGGGCTCTTGTTACTCCACCAGGCACGACATTGAGAGTGGCCTCTAATCTCCGGATATGTGTTGATTGCCACAACTTTTTGAAACTGTTTTCTGCTGTTTACAATCGTGATGTAATTCTCAGAGACCATAAACGGTTTCACCACTTCCGGGGAGGGCATTGCTCCTGTACTGACTATTGGTAG 1959 0.4125 MALALSSCSNRFLLTATNLQSPSYFTSTIAIHLHHYNTIPQPYQQYQQKPSPKLVPLPLYKQIQPTPISHFSLTHKESIISTIKSINHTTHLHQIHAHILTTTLVQDSAVSHHFLCRVALSGPLQNPTYSQRFFEQINHPFVSHYNTMIRAYSFSDSPQKALFLYRDMRRRGVAANPLSSSFAVKSCIRFLYLLGGVQVHCNISKDGHQSDTLLLTALMDLYSQCQRCDDACKVFDEMPHKDTVAWNVMISCFIRNNRTRDALSLFDVMQTERYECEPDDVTCLLLLQACARLNSLEFGERIHSYIMEHGYGGALNLSNSLITMYSRCGCLDKAYEVFKGLKNKSVVSWSAMISGLAVNGYGREAIEAFEEMQRNGIQPDDHTFTGVLSACSHSGLLDEGVSFFDRMISEFRVTPAVHHYGCIVDLLGRAGLVDKAYKLITSMEVKPDSTVWRTLLGACRIHGHLTLGERVIEHLIELKGQEAGDYVLLLNLYSSAGHWEKVAEVRKLMREKSIQTTPGCCTIELKGVVHEFVVDDVSHSRKVEIYRTLDEINKQLKIAGYVVELSSELHKMDDKGKGYALSYHSEKLAIAFGALVTPPGTTLRVASNLRICVDCHNFLKLFSAVYNRDVILRDHKRFHHFRGGHCSCTDYW* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4254 652 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 73 644 - -
Mal5g4254 652 Pfam E motif 464 524 IPR046848 -
Mal5g4254 652 Gene3D Tetratricopeptide repeat domain 408 580 IPR011990 GO:0005515
Mal5g4254 652 TIGRFAM PPR: pentatricopeptide repeat domain 347 380 IPR002885 -
Mal5g4254 652 TIGRFAM PPR: pentatricopeptide repeat domain 145 176 IPR002885 -
Mal5g4254 652 TIGRFAM PPR: pentatricopeptide repeat domain 244 275 IPR002885 -
Mal5g4254 652 TIGRFAM PPR: pentatricopeptide repeat domain 382 410 IPR002885 -
Mal5g4254 652 Pfam DYW family of nucleic acid deaminases 560 652 IPR032867 GO:0008270
Mal5g4254 652 PANTHER OS08G0434000 PROTEIN 73 644 - -
Mal5g4254 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Mal5g4254 652 Pfam PPR repeat 144 173 IPR002885 -
Mal5g4254 652 Pfam PPR repeat 216 240 IPR002885 -
Mal5g4254 652 Pfam PPR repeat 419 444 IPR002885 -
Mal5g4254 652 Gene3D Tetratricopeptide repeat domain 196 304 IPR011990 GO:0005515
Mal5g4254 652 Gene3D Tetratricopeptide repeat domain 78 195 IPR011990 GO:0005515
Mal5g4254 652 Gene3D Tetratricopeptide repeat domain 305 400 IPR011990 GO:0005515
Mal5g4254 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Mal5g4254 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Mal5g4254 652 Pfam PPR repeat family 241 292 IPR002885 -
Mal5g4254 652 Pfam PPR repeat family 344 392 IPR002885 -
Mal5g4254 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 410 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4254 Mal-Chr5 113582004 113583962 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4254 78 652 Glycoside Hydrolase AT3G49170 33.677 5.27e-112 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4254 - - lja:Lj0g3v0169319.1 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4254 5 113582004 113583962 Mal5g4254 5 113582004 113583962 ECH
Mal6g2101 6 48822128 48823933 Mal5g4254 5 113582004 113583962 PCT