Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1766 ATGATTACCCAAAACCAACGTTATTATTATCAAATATTCTCCATAACACTAATTAGCGTCACATTAACTTCAGTTTCAGCTCGTTTCTTCCCTAATCCATCTTCAATTCCAGCATGGATGTCTAGCAACGCGCCACCAGGCGCGTGGGAAGCCTACCGAAACTTCACCGGCTGCAGCCGCGGCAAAACATACGACGGCCTCTCCAAACTCAAAAACTACTTCCACCACTTCGGTTACATCCCCAACGCGCCGCCGTTAAATTTCACCGACGACTTCGATGACGCCTTAGAATCAGCCGTCCGCACCTACCAAAAAAATTTCAACCTCAACATCACCGGCGAACTCGACGACGCAACAATGAACTTCATCGTAAAACCACGCTGCGGTGTCGCTGATATCATCAACGGCACAACCTCCATGAACTCCGGCAAATTCAACTCCAGCTCGACAAACTTCCACACAGTTGCACACTATTCATTCTTCCCCGGCGAGCCACGGTGGCCGGAGGGAACACAAACCCTAACCTACGCTTTCGATCCAAACGAAAACCTCGACGACGCAACGAAACAAGTTTTCGCTAACGCGTTTAATCAATGGTCAAAAGTAACAACAATAACATTCACAGAAACGACATCGTATCGTTCATCAGATATTAAAATAGGGTTTTACAGTGGGGACCACGGTGACGGAGAAGCATTTGACGGAGTCCTTGGAACATTAGCACATGCATTTTCACCAACTGATGGAAGATTACACTTAGACAAAGCAGAAGATTGGGTAGTTAACGGAGATATAACGGAGTCATCTTTATCTAACGCTGTTGATTTAGAATCTGTTGCGGTGCATGAAATAGGTCATTTATTAGGGTTAGGACATTCTTCTATTGAAGAAGCTATTATGTACCCTACGATAAGTTCAAGAACGAAGAAAGTTGAACTTGAGAGTGATGATATTGAAGGGATTCAGAAGCTTTATGGGTCTAACCCTAATTTTACTGGGACAACTACTGCTACTACTTCGAGAGATAGAGATTCTAGTTTTGGTGGAAGACATGGGGTGTCTTTGTTTTTGTCTTTGATGTTTCTTGGGTTTGGGTTTTTGAGTTTGTAG 1110 0.4405 MITQNQRYYYQIFSITLISVTLTSVSARFFPNPSSIPAWMSSNAPPGAWEAYRNFTGCSRGKTYDGLSKLKNYFHHFGYIPNAPPLNFTDDFDDALESAVRTYQKNFNLNITGELDDATMNFIVKPRCGVADIINGTTSMNSGKFNSSSTNFHTVAHYSFFPGEPRWPEGTQTLTYAFDPNENLDDATKQVFANAFNQWSKVTTITFTETTSYRSSDIKIGFYSGDHGDGEAFDGVLGTLAHAFSPTDGRLHLDKAEDWVVNGDITESSLSNAVDLESVAVHEIGHLLGLGHSSIEEAIMYPTISSRTKKVELESDDIEGIQKLYGSNPNFTGTTTATTSRDRDSSFGGRHGVSLFLSLMFLGFGFLSL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1766 369 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 160 330 - -
Mal6g1766 369 CDD ZnMc_MMP 166 326 IPR033739 GO:0008237|GO:0008270
Mal6g1766 369 Gene3D Collagenase (Catalytic Domain) 56 332 IPR024079 GO:0008237
Mal6g1766 369 PRINTS Matrixin signature 123 136 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal6g1766 369 PRINTS Matrixin signature 279 304 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal6g1766 369 PRINTS Matrixin signature 192 207 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal6g1766 369 PRINTS Matrixin signature 216 244 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal6g1766 369 PRINTS Matrixin signature 313 326 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal6g1766 369 PANTHER MATRIX METALLOPROTEINASE 11 363 - -
Mal6g1766 369 Pfam Putative peptidoglycan binding domain 67 121 IPR002477 -
Mal6g1766 369 Pfam Matrixin 171 326 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Mal6g1766 369 SUPERFAMILY PGBD-like 70 133 IPR036365 -
Mal6g1766 369 SMART col_5 163 327 IPR006026 GO:0006508|GO:0008237|GO:0008270
Mal6g1766 369 PANTHER MATRIX METALLOPROTEINASE 11 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1766 Mal-Chr6 34033040 34034149 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1766 - - gmx:100781471 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1766 6 34033040 34034149 Mal5g2674 5 78134746 78135864 PCT