Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2674 ATGAATAAACAACAACTCATCTTCGCTTTCACAATTTCATTCTCTCTCACTCTCGTAGTTGTTTCACCTCGTCTATTTCCCGATGTCCCCTCATGGATACCTCCCGTCACTCCACCCGCCGGCGCGTGGGACTCCTTCCGCAACTTCACCGGCTGCCGCCAAGGTGAAAACTACAACGGTCTCTCCAATTTGAAAAACTACTTCCACCACTTCGGTTACATTCCCCACGCGCCACCATCAAATTTCTCCGACGACTTCGACGATGATCTTGAAGAAGCAATTAAAACCTACCAGAAGAATTTTAATCTCAATGTAACCGGTGAACTCGACGACAACACTCTCCGTCAGGTCATGCTACCGCGTTGCGGTGTCGCGGATATAATCAACGGCACAACCACCATGAACGCCGGCAAGGACACAGAAACAACGTCCGGTGATAGCAAGCTGCGGTTCCATACCGTATCTCACTTCACCGTCTTTCCCGGTCAACCACGGTGGCCGGAGGGAAAACAGGAGCTAACCTACGCGTTCTTCCCCGGTAACGAACTTACAGAAACCGTGAAAGGCGTCTTCGCAACAGCGTTTTCACGGTGGTCGGAGGTCACGACACTGAAATTCACCGAAACAGCGTTATATTCCGGCGCTGATATTAAGATCGGATTCTTCAACGGCAATCATGGAGACGGTGAGCCGTTCGACGGAAGATTAGGAACGCTAGCACATGCTTTCTCTCCAACGAACGGGAGGTTTCACCTTGACGCTGCAGAGGACTGGGTAGTTTCCGGCGATGTGTCGAAGTCGTCGTTGCCAACTGCGGTTGATTTGGAATCAGTTGCGGTGCACGAAATTGGGCACTTATTAGGATTAGGTCACTCGTCGGTGGAGGAAGCGATTATGTTTCCGACGATATCGTCACGGATGAAGAAAGTGGTGCTGGAGGAAGATGATGTAAGGGGAATTCAATACCTCTATGGTACTAATCCTAGTTTCAATGGCTCCACCACCATGTCGTCGCCGGAGAGGAATACCGGTAACGGTGGTTGCAGCCTAACTTCTATGTGGTCCGCGTGGAGACTTTTGGTTCTGTTGACTTTTGCATTCTCACTTTTCTTATTATAG 1119 0.4996 MNKQQLIFAFTISFSLTLVVVSPRLFPDVPSWIPPVTPPAGAWDSFRNFTGCRQGENYNGLSNLKNYFHHFGYIPHAPPSNFSDDFDDDLEEAIKTYQKNFNLNVTGELDDNTLRQVMLPRCGVADIINGTTTMNAGKDTETTSGDSKLRFHTVSHFTVFPGQPRWPEGKQELTYAFFPGNELTETVKGVFATAFSRWSEVTTLKFTETALYSGADIKIGFFNGNHGDGEPFDGRLGTLAHAFSPTNGRFHLDAAEDWVVSGDVSKSSLPTAVDLESVAVHEIGHLLGLGHSSVEEAIMFPTISSRMKKVVLEEDDVRGIQYLYGTNPSFNGSTTMSSPERNTGNGGCSLTSMWSAWRLLVLLTFAFSLFLL* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2674 372 Gene3D Collagenase (Catalytic Domain) 49 330 IPR024079 GO:0008237
Mal5g2674 372 SUPERFAMILY PGBD-like 64 127 IPR036365 -
Mal5g2674 372 PRINTS Matrixin signature 117 130 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal5g2674 372 PRINTS Matrixin signature 215 243 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal5g2674 372 PRINTS Matrixin signature 278 303 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal5g2674 372 PRINTS Matrixin signature 312 325 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal5g2674 372 PRINTS Matrixin signature 191 206 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal5g2674 372 Pfam Matrixin 169 325 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Mal5g2674 372 PANTHER MATRIX METALLOPROTEINASE 2 351 - -
Mal5g2674 372 CDD ZnMc_MMP 165 325 IPR033739 GO:0008237|GO:0008270
Mal5g2674 372 Pfam Putative peptidoglycan binding domain 59 116 IPR002477 -
Mal5g2674 372 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 160 329 - -
Mal5g2674 372 SMART col_5 162 326 IPR006026 GO:0006508|GO:0008237|GO:0008270
Mal5g2674 372 PANTHER MATRIX METALLOPROTEINASE 2 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2674 Mal-Chr5 78134746 78135864 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2674 - - aprc:113858627 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2674 5 78134746 78135864 Mal5g2674 5 78134746 78135864 ECH
Mal6g1766 6 34033040 34034149 Mal5g2674 5 78134746 78135864 PCT