Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1090 ATGTCAGAACCTTTGGCTTCTGGGAATGGTTCTTTTAAGAAGAAAGCAATGAATGCCTCAAACATTCTCAGGAATTCTTTGACGAAAAAGGGTAGGCGAAGTAGTAAGGTCATGTCTGTTGAAATTGAGGATGTTCATGATGCCGAGGAGTTGAAAGCTGTTGAAGAGTTCCGTCAAGCTCTTATATCGGATGACCTCCTCCCTGCAAAACATGATGACTATCATATGATGCTTAGATTCCTCAAGGCCAGGAAATTTGAAATTGATAAATCAAAGCTGATGTGGTCTGACATGCTGAAATGGAGGAAGGAATTCGGTGCTGACACTATTGCGGAGGAATTTGAATTCAAGGAAATTGATGAAGTATTAAAATATTATCCACAAGGACATCATGGAGTAGACAGAGAAGGAAGACCTGTGTACATAGAAAGATTAGGACAAGTCGATGCGACCAAGATGATGCAAGTCACAACCATGGATCGCTATATCAAGTACCATGTAAAGGAGTTTGAGAGGACATTCGATGTAAAGTTTGCGGCTTGTTCCATTGCTGCCAAGAAGCACATCGATCAAAGTACGACTATCCTGGATGTGGAGGGAGTGGGGCTTAAAAGCTTCAGCAAACATGCTAGGGAACTTGTTACTCGCATTCAGAAGATTGACGGTGACAACTATCCAGAGACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTTAGAATACTGTGGAACACTGTAAAATCCTTCCTTGATCCCAAGACCACAGCAAAAATCAATGTTCTTGGCAACAAGTATGATAGTAAGTTGCTTGAAGTAATTGATGAAAGCGAGTTGCCCGAGTTTTTAGGAGGTAAATGTAAATGTGCTGATGAAGGAGGATGTATGCGTTCGGATAAGGGCCCATGGAAAGATGCTGAAATACTGAAGTTGGTTGAGAATGGTGCTCACAAATGTTCAAGAAAATCCGAGTCTCATGTTGAGGAAGAGAAACAAAATTCTGAGGACCACACGGCTTCCAAGTTGGAGGTAAATGTCACCTCACAAGTTTCTCCAATTTGTGAAGAGGTCCCTGCGACTAAAGCTTCCAAGCACGAGGATGTAATCCCGGTGGATGATAAAAAAACTGCTCAGAAAAAACTTGACGAGAAAGATAAAAAAACTACTCAGAAAAAACCTGACGAGAAAGACGCAATGGAAACCTCAGAAGAGTTTGTGACTGTCATGAAACGCATGACCGAGTTGGAACAGAAAATGACAACCATTAATCATCAACCTGTTTTAATGCCACCTGAGAAGGAGGAAATGCTACATAATACTATTAGTCGAGCTGATTTATTGGAAAAAGAACTCTTGGCCACCAAGAAGGCTTTAGAAGATTCAATGGCTAAGCAAGAGGAGATTTCGGCTTATGTTGAGAAGAAAAAACAGAATAGAAGAAAGTGTAACTAG 1455 0.4103 MSEPLASGNGSFKKKAMNASNILRNSLTKKGRRSSKVMSVEIEDVHDAEELKAVEEFRQALISDDLLPAKHDDYHMMLRFLKARKFEIDKSKLMWSDMLKWRKEFGADTIAEEFEFKEIDEVLKYYPQGHHGVDREGRPVYIERLGQVDATKMMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVEGVGLKSFSKHARELVTRIQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKINVLGNKYDSKLLEVIDESELPEFLGGKCKCADEGGCMRSDKGPWKDAEILKLVENGAHKCSRKSESHVEEEKQNSEDHTASKLEVNVTSQVSPICEEVPATKASKHEDVIPVDDKKTAQKKLDEKDKKTTQKKPDEKDAMETSEEFVTVMKRMTELEQKMTTINHQPVLMPPEKEEMLHNTISRADLLEKELLATKKALEDSMAKQEEISAYVEKKKQNRRKCN* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1090 484 CDD SEC14 119 287 IPR001251 -
Mal6g1090 484 SUPERFAMILY CRAL/TRIO domain 118 312 IPR036865 -
Mal6g1090 484 MobiDBLite consensus disorder prediction 320 402 - -
Mal6g1090 484 Gene3D - 106 318 IPR036865 -
Mal6g1090 484 SMART CRAL_TRIO_N_2 73 98 IPR011074 -
Mal6g1090 484 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 391 482 - -
Mal6g1090 484 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 10 391 - -
Mal6g1090 484 SUPERFAMILY CRAL/TRIO N-terminal domain 47 113 IPR036273 -
Mal6g1090 484 MobiDBLite consensus disorder prediction 340 355 - -
Mal6g1090 484 MobiDBLite consensus disorder prediction 360 402 - -
Mal6g1090 484 Gene3D - 27 105 - -
Mal6g1090 484 Coils Coil 449 469 - -
Mal6g1090 484 MobiDBLite consensus disorder prediction 320 339 - -
Mal6g1090 484 Pfam CRAL/TRIO domain 124 286 IPR001251 -
Mal6g1090 484 SMART sec14_4 118 289 IPR001251 -
Mal6g1090 484 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 391 482 - -
Mal6g1090 484 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 10 391 - -
Mal6g1090 484 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 118 292 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1090 Mal-Chr6 16541743 16545406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1090 79 283 Acyl Lipid Metabolism Gene Families AT5G47730 29.469 1.66e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1090 - - gmx:100527533 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1090 6 16541743 16545406 Mal6g1090 6 16541743 16545406 ECH
Mal7g2580 7 87490023 87493465 Mal6g1090 6 16541743 16545406 ECH