Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0868 ATGGACGTTCACCAGAAAAGTGTGAACGCCGTCGAACTTTCCGTCAAATCTTCAAAAACGAAGCATGATTCACAGTCACAACCTTCACTGTACTTAACAAACGCGGTTTTCTTCGGTCTCTTCTTCTCCGTCGCGTATTTTCTTCTTCACCGGTGGCGTGAGAAGATCCGAACCTCTACACCTCTCCATGTCCTCACAATCTCCGAGATTGCCGCCGTTGTTTCCCTTATCGCTTCTGTCATCTACCTCATGGCTTTCTTCGGCATTGGCTTCATTCTTCATCCTTTCGCCGCTTCTCGTGCTGTTCATTACGATGAAGAAGATGAATCCGACATTTCAAAAAACTCCGGTTCATGCCTCGCCGGAGTCTCACCGCCGAAAATCGCCGTTGAAATTTTTTCTACGGCGACTTCGCCGGCACCGGTACCGGCGCTACTTTCAATGGAAGACGAGGAGGTAGTCTGTGCGGTGGTAACAGGATCAATTCCGTCATACTCACTTGAATCAAAACTCGGAGATTGCAAACGTGCGGCAGCGATACGTAACCAAGCGGTGGAGAGAGTAACCGGAAAGTCACTTTCGGGTTTACCGATGGAAGGTTTTGATTATGATTCAATATTAGGACAGTGTTGTGAGATGCCGATAGGATTTATTCAGATTCCGGTGGGAGTTGCCGGACCTTTGTTGCTCGACGGGAAGGAGTACACGGTACCGATGGCAACCACTGAAGGTTGTTTGGTTGCTAGTACTAATAGAGGATGTAAAGCTATTTATGTTTCCGGTGGTGCTTCCGCGGTTGTCCTCCGTGATGGCATGACTAGAGCTCCCGTCGTTAGATTCAACTCCGCCAAAAGAGCTTCTCAGTTAAAGTTCTTTTTAGAAGATCCTCGAAATTTTGATTCCCTCTCTCACACTTTCAACAAGTCAAGTAGATTTGCAAGATTACAGAGTATTAAAGCTACAATGGCAGGAAAGAATTTATACATTAGATTTACTTGTTCAACCGGTGATGCAATGGGGATGAATATGGTATCAAAAGGTGTTCAAAACGTACTTGACTTTCTTCAAAGCGATTTTCCTGATATGGATGTTATTGGTATATCAGGAAATTTTTGTTCGGACAAGAAAGCTGCGGCGGTGAATTGGATTGAAGGGAGAGGGAAATCTGTTGTGTGTGAAGCTGTAATTAAGGAAGAGGTGGTGAAGAAAGTGTTGAAGACTAGTGTGGAGTCTTTGGTTGAGCTTAACATGCTCAAAAACCTTACTGGTTCAGCCATGGCTGGTGCTCTTGGTGGATTCAATGCACATGCTAGTAATATTGTTTCTGCAATTTACTTGGCTACAGGTCAAGATCCTGCTCAGAATGTTGAAAGTTCTCACTGTATGACCATGATGGAAGCTGTGAATGGTGGGAAAGACCTTCATGTCTCTGTTACTATGCCTTCCATTGAGGTAGGTACAGTTGGAGGGGGGACTCAGCTTGCATCACAATCAGCTTGTTTGAATTTACTTGGTGTTAAGGGGGCTAGTAAAGAGACTCCAGGGGCAAATTCTAGACAATTGGCAACTATAGTAGCCGGTTCGGTCCTTGCAGGAGAGCTCTCACTCATGTCTGCAATTGCAGCTGGGCAGCTTGTAAAGAGCCACATGAAATACAACAGATCTAGTAAAGATGTCACCAAAGTTGCTTCATGA 1695 0.4507 MDVHQKSVNAVELSVKSSKTKHDSQSQPSLYLTNAVFFGLFFSVAYFLLHRWREKIRTSTPLHVLTISEIAAVVSLIASVIYLMAFFGIGFILHPFAASRAVHYDEEDESDISKNSGSCLAGVSPPKIAVEIFSTATSPAPVPALLSMEDEEVVCAVVTGSIPSYSLESKLGDCKRAAAIRNQAVERVTGKSLSGLPMEGFDYDSILGQCCEMPIGFIQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIYVSGGASAVVLRDGMTRAPVVRFNSAKRASQLKFFLEDPRNFDSLSHTFNKSSRFARLQSIKATMAGKNLYIRFTCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVESLVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYLATGQDPAQNVESSHCMTMMEAVNGGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKETPGANSRQLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVTKVAS* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0868 564 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 4 564 - -
Mal6g0868 564 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 539 552 IPR023076 GO:0004420
Mal6g0868 564 CDD HMG-CoA_reductase_classI 151 554 IPR004554 GO:0004420|GO:0005515|GO:0008299
Mal6g0868 564 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 4 564 IPR002202 GO:0004420|GO:0015936
Mal6g0868 564 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 328 346 IPR002202 GO:0004420|GO:0015936
Mal6g0868 564 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 368 393 IPR002202 GO:0004420|GO:0015936
Mal6g0868 564 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 419 445 IPR002202 GO:0004420|GO:0015936
Mal6g0868 564 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 237 257 IPR002202 GO:0004420|GO:0015936
Mal6g0868 564 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 210 231 IPR002202 GO:0004420|GO:0015936
Mal6g0868 564 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 473 494 IPR002202 GO:0004420|GO:0015936
Mal6g0868 564 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 148 554 IPR004554 GO:0004420|GO:0005515|GO:0008299
Mal6g0868 564 Gene3D - 271 387 IPR009023 -
Mal6g0868 564 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 150 554 IPR002202 GO:0004420|GO:0015936
Mal6g0868 564 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 485 492 IPR023076 GO:0004420
Mal6g0868 564 Gene3D - 221 541 IPR023074 GO:0004420
Mal6g0868 564 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 271 387 IPR009023 -
Mal6g0868 564 Pfam Hydroxymethylglutaryl-coenzyme A reductase 178 554 IPR002202 GO:0004420|GO:0015936
Mal6g0868 564 Gene3D - 146 220 IPR023282 GO:0004420
Mal6g0868 564 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 145 543 IPR009029 GO:0015936|GO:0016616
Mal6g0868 564 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 330 344 IPR023076 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0868 Mal-Chr6 13011891 13015175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0868 2 560 Lipid Metabolism Gene Families AT1G76490 69.739 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0868 K00021 - gmx:100790033 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0868 6 13011891 13015175 Mal5g3207 5 94062431 94065209 ECH
Mal6g0868 6 13011891 13015175 Mal6g0868 6 13011891 13015175 ECH
Mal6g0868 6 13011891 13015175 Mal5g3207 5 94062431 94065209 PCT