Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3207 ATGGACGTTCGCCGAAGACCACAATCTCTGCCCGCCGGAAAACACCTCAAAACCCAGAAACTCACCGCCACCACCGCCGGAGAACATGCACAGACCGTTTCTCTCTGCGTCGCCAACGCTGTTTTCTTCGGTTTATTCTTCTCCGTCGCGTATTTTCTCCTCCACCGTTGGCGTGAGAAGATCAGAACCTCCACTCCTCTTCACGTCGTCACCGCCTCCGAAACCGCCGCCATCGTTTCTCTAATCGCCTCCGCCGTTTACCTTCTAGGTTTCTTCGGTATCGGATCTCGTACTTCCTTCCCGGACGATCTCTCCGATGAAGAGATTCTCGCGAAAGAAGACTCTCGAAAACCTGGACCGTGTCCCGCCGCACTTGTCGAAACCGATACTAAACCGGTTCCGGCAATTGTAGCTCCGGCGAAGATCTACGTTGTTGCTGAACCGGTAAACCTCTCACCAGAAGACGAGGAAACCGTGAAATCAGTGGTTTCCGGTTCAATTCCGTCGTATTCACTTGAATCTAAACTTGCAGATTGCCGGAAAGCAGCTGCGATTCGTCGTTCGGCGGTTGAGATGATAACTGCAAAATCATTGGAAGGTTTACCGTTGGAAGGTTTCGATTACGATTCGATATTAGGGCAGTGTTGTGAGATGCCAATAGGGTTTGTTCAAATTCCGGTTGGAGTTGCGGGTCCACTGTTGTTGGATGAAGTTGAGTACACTGTACCAATGGCTACTACTGAGGGTTGTTTAGTTGCCAGTACCAATAGAGGGTGTAAAGCTATTTATGCTTCTGGTGGAGCTTCTTCTGTTTTGCTTAGAGATGGAATGACTAGAGCACCTGTTGTTAGGTTTTCGTCGGCGAAAAGAGCTTCTCAGTTGAAGTTTTTCTTGGAAGATCCGCTTAATTTTGATGCACTTTCCGTCACTTTCAACAAGTCAAGCAGATTCGCTAGATTGCAGAGCATTCAGCCTACTATTGCTGGCAAGAATTTGTACATTCGATTCCGTTGCAGTACAGGTGATGCGATGGGGATGAACATGGTATCAAAAGGTGTTCAAAATGTCCTTGATTTTCTTCAGAGTGACTTCCCCGACATGGATGTCATCGGAATCTCAGGAAATTTCTGTTCCGACAAGAAAGCGGCGGCTGTGAACTGGATTGAAGGGCGTGGTAAGTCTGTGGTGTGTGAGGCTGTAATTAAGGAAGAAGTGGTGAAGAAAGTGTTGAAGACCAATGTGGCGGCCTTGGTTGAGCTTAACATGCTTAAGAACCTAACTGGATCAGCCATTGCTGGTGCTCTTGGTGGGTTCAATGCTCATGCTAGCAATATCGTGTCTGCTATCTACATAGCCACTGGTCAAGATCCTGCTCAGAATGTGGAAAGTTCTCACTGTATTACCATGATGGAACCTGTGAATGATGGCAAGGACCTTCACATTTCTGTCACCATGCCTTCCATTGAGGTTGGTACAGTGGGAGGGGGAACACAACTCGCATCTCAGTCAGCCTGTCTCAATTTACTTGGTGTTAAGGGTGCCAGCAAAGAATCTCCAGGTGCAAATTCTAGACTACTGGCCACCATTGTTGCCGGTTCAGTTCTCGCCGGCGAGCTATCACTCATGTCTGCAATTGCAGCTGGCCAACTAGTTAAGAGTCACATGAAATACAATAGATCTAGCAGAGATATTTCTAAAATCGTCTCGTGA 1710 0.4772 MDVRRRPQSLPAGKHLKTQKLTATTAGEHAQTVSLCVANAVFFGLFFSVAYFLLHRWREKIRTSTPLHVVTASETAAIVSLIASAVYLLGFFGIGSRTSFPDDLSDEEILAKEDSRKPGPCPAALVETDTKPVPAIVAPAKIYVVAEPVNLSPEDEETVKSVVSGSIPSYSLESKLADCRKAAAIRRSAVEMITAKSLEGLPLEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDEVEYTVPMATTEGCLVASTNRGCKAIYASGGASSVLLRDGMTRAPVVRFSSAKRASQLKFFLEDPLNFDALSVTFNKSSRFARLQSIQPTIAGKNLYIRFRCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTNVAALVELNMLKNLTGSAIAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEPVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRDISKIVS* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3207 569 Pfam Hydroxymethylglutaryl-coenzyme A reductase 183 559 IPR002202 GO:0004420|GO:0015936
Mal5g3207 569 Gene3D - 226 546 IPR023074 GO:0004420
Mal5g3207 569 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 544 557 IPR023076 GO:0004420
Mal5g3207 569 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 569 IPR002202 GO:0004420|GO:0015936
Mal5g3207 569 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 335 349 IPR023076 GO:0004420
Mal5g3207 569 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 142 548 IPR009029 GO:0015936|GO:0016616
Mal5g3207 569 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 276 392 IPR009023 -
Mal5g3207 569 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 373 398 IPR002202 GO:0004420|GO:0015936
Mal5g3207 569 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 333 351 IPR002202 GO:0004420|GO:0015936
Mal5g3207 569 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 478 499 IPR002202 GO:0004420|GO:0015936
Mal5g3207 569 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 242 262 IPR002202 GO:0004420|GO:0015936
Mal5g3207 569 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 215 236 IPR002202 GO:0004420|GO:0015936
Mal5g3207 569 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 424 450 IPR002202 GO:0004420|GO:0015936
Mal5g3207 569 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 156 559 IPR004554 GO:0004420|GO:0005515|GO:0008299
Mal5g3207 569 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 569 - -
Mal5g3207 569 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 490 497 IPR023076 GO:0004420
Mal5g3207 569 Gene3D - 151 225 IPR023282 GO:0004420
Mal5g3207 569 Gene3D - 276 392 IPR009023 -
Mal5g3207 569 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 155 559 IPR002202 GO:0004420|GO:0015936
Mal5g3207 569 CDD HMG-CoA_reductase_classI 156 559 IPR004554 GO:0004420|GO:0005515|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3207 Mal-Chr5 94062431 94065209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3207 1 565 Lipid Metabolism Gene Families AT1G76490 69.728 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3207 K00021 - gmx:100811237 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0868 6 13011891 13015175 Mal5g3207 5 94062431 94065209 ECH
Mal5g3207 5 94062431 94065209 Mal5g3207 5 94062431 94065209 ECH
Mal6g0868 6 13011891 13015175 Mal5g3207 5 94062431 94065209 PCT