LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g5189	ATGCAATTCATTCCTCACCAAATATACTTCTTTTCCCTTCAAATGGCAAATAAAATACTTATTGGCCTTCTTCTCATAGCCTTTTTGGTAGAAGCCTCTGCTACTAATTTTAATCAATACTTTGATATAACATGGGGTGATGGTCGTGGCAAAATCCTCAACAACGGACAACTTCTTACTCTGTCTTTGGACAAAGCTTCTGGCTCTGGATTTCGTTCCAAAAATGAGTACTTGTTTGGTAAAATTGACATGCAACTAAAGCTTGTGCCGGGTAACTCTGCTGGTACAGTCACAACATATTATCTATCTTCTCTTGGGGATGCTCATGATGAAATAGATTTTGAATTTTTGGGTAACTTAAGTGGTGATCCTTATATTGTTCATACAAACATTTATGCACAAGGGAAAGGAAATAAAGAACAACAATTTTATTTGTGGTTCGACCCCACCAAGGACTTTCACACTTATTCCATTCTTTGGAATCCTCAAAGCATCATATTTTCTGTGGATGGGACCCCATTAAGGGAATTCAAGAATTTAGAATCAAAAGGTATTCCTTTTCCTAGAAGCCAAGCAATGAGTATATACTCAAGCCTTTGGGATGCAGATAATTGGGCAACAAGGGGAGGCCTAGTGAAAACAGATTGGTCCCAAGCACCATTCACTGCCTCATATGGAAACTTCAACATCCAAGCTTGTGTTTGGACTTCTTCTTCAGGCTCCTCTTGCTCTTCCAACAATCCATCTTCAAATCAATCATGGATGAAACAGTCCTTAGATTCTACAGGACAAGCTAGGATTCAATGGGTGCAAAAAAATTATATGATTTACAACTATTGCACTGATACTAAACGATTTCCTCAAGGCCTCCCTCCTGAATGCTCACTTGCATGA	894	0.387	MQFIPHQIYFFSLQMANKILIGLLLIAFLVEASATNFNQYFDITWGDGRGKILNNGQLLTLSLDKASGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTTYYLSSLGDAHDEIDFEFLGNLSGDPYIVHTNIYAQGKGNKEQQFYLWFDPTKDFHTYSILWNPQSIIFSVDGTPLREFKNLESKGIPFPRSQAMSIYSSLWDADNWATRGGLVKTDWSQAPFTASYGNFNIQACVWTSSSGSSCSSNNPSSNQSWMKQSLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECSLA*	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g5189	297	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	250	294	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Mal5g5189	297	SUPERFAMILY	Concanavalin A-like lectins/glucanases	36	296	IPR013320	-
	Mal5g5189	297	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	1	225	IPR000757	GO:0004553\|GO:0005975
	Mal5g5189	297	Gene3D	-	23	296	-	-
	Mal5g5189	297	Pfam	Glycosyl hydrolases family 16	38	217	IPR000757	GO:0004553\|GO:0005975
	Mal5g5189	297	CDD	GH16_XET	32	294	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Mal5g5189	297	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	111	121	IPR008263	GO:0004553\|GO:0005975
	Mal5g5189	297	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	19	296	-	-
	Mal5g5189	297	PIRSF	EndGlu_transf	5	297	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Mal5g5189	297	PRINTS	Glycosyl hydrolase family 16 signature	69	87	IPR008264	GO:0004553\|GO:0005975
	Mal5g5189	297	PRINTS	Glycosyl hydrolase family 16 signature	127	140	IPR008264	GO:0004553\|GO:0005975
	Mal5g5189	297	PRINTS	Glycosyl hydrolase family 16 signature	145	162	IPR008264	GO:0004553\|GO:0005975
	Mal5g5189	297	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	19	296	IPR044791	GO:0004553

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g5189	Mal-Chr5	125801374	125803090	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g5189	20	297	Glycoside Hydrolase	AT4G25810	69.065	6.82e-146	409

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g5189	K14504		-	gmx:100807063	503.827

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal5g5189	5	125801374	125803090	Mal4g3355	4	98190529	98192734	PCT