LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal4g3355	ATGAAAGGTTCTATTGTGTTTCTTCCTCTTATTATAGCCACTTTTTTTGTGGTTGCATCCGCTGGTAATTTTAACCAAGACTTTGAAATAACATGGGGTGATAGTCGTGCCAAAATCCTTGAAAATGGACAGAGTCTTAGCCTCACCTTAGACAAATCCTCTGGCTCTGGCTTTCGTTCCAAAAATGAGTACTTGTTTGGAAAAATTGACATGCAACTCAAACTTGTGGCTGGTAATTCTGCTGGCACCGTCACAGCCTATTATCTATCTTCTCTAGGGCCCACTCATGATGAAATAGACTTTGAATTTCTTGGTAACTTGAGTGGTGATCCTTATATTCTTCATACAAATGTATTCACACAAGGGAAAGGGAATAGAGAGCAACAATTCTATTTGTGGTTTGACCCTACCAAGGACTTCCACACATATTCCCTTCTTTGGAATCCTCAAAGCATCATATTCTCTGTGGATGGAACACCAATAAGAGAGTTCAAGAATTTAGAATCAAAAGGGGTTGCTTTTGCAAAGAACCAAGCCATGAGGATATATTCAAGTCTTTGGAATGCTGAAGATTGGGCCACAAGAGGTGGACTTATTAAAACAGATTGGACCAAGGCCCCATTCATTGCCTCGTATAGAAACTTCAATGCACAAGCTTGTATTTGGACTTCTTCAGGCTCTTCATGTTTTTCCAACAAATCTCCATCATCATCATCTACTCAATCATGGTTAAGAGAATCACTTGACTCAAATGGCATAGCAAAAATTCATTGGGTGCAAAGGAATTACATGATTTATAATTACTGCACTGATTCTAAGCGTTTCCCACAAGGCTTCCCTGTTGAATGTTTTGCCTGA	858	0.3928	MKGSIVFLPLIIATFFVVASAGNFNQDFEITWGDSRAKILENGQSLSLTLDKSSGSGFRSKNEYLFGKIDMQLKLVAGNSAGTVTAYYLSSLGPTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSLLWNPQSIIFSVDGTPIREFKNLESKGVAFAKNQAMRIYSSLWNAEDWATRGGLIKTDWTKAPFIASYRNFNAQACIWTSSGSSCFSNKSPSSSSTQSWLRESLDSNGIAKIHWVQRNYMIYNYCTDSKRFPQGFPVECFA*	286

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal4g3355	285	Pfam	Glycosyl hydrolases family 16	25	205	IPR000757	GO:0004553\|GO:0005975
	Mal4g3355	285	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	8	284	IPR044791	GO:0004553
	Mal4g3355	285	Gene3D	-	11	285	-	-
	Mal4g3355	285	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	18	212	IPR000757	GO:0004553\|GO:0005975
	Mal4g3355	285	PIRSF	EndGlu_transf	2	285	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Mal4g3355	285	CDD	GH16_XET	19	283	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Mal4g3355	285	PRINTS	Glycosyl hydrolase family 16 signature	56	74	IPR008264	GO:0004553\|GO:0005975
	Mal4g3355	285	PRINTS	Glycosyl hydrolase family 16 signature	132	149	IPR008264	GO:0004553\|GO:0005975
	Mal4g3355	285	PRINTS	Glycosyl hydrolase family 16 signature	114	127	IPR008264	GO:0004553\|GO:0005975
	Mal4g3355	285	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	8	284	-	-
	Mal4g3355	285	SUPERFAMILY	Concanavalin A-like lectins/glucanases	23	284	IPR013320	-
	Mal4g3355	285	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	239	283	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Mal4g3355	285	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	98	108	IPR008263	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal4g3355	Mal-Chr4	98190529	98192734	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal4g3355	11	285	Glycoside Hydrolase	AT4G25810	72.000	2.88e-150	420

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal4g3355	K14504		-	gmx:100807063	478.404

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal5g5189	5	125801374	125803090	Mal4g3355	4	98190529	98192734	PCT