Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5097 ATGGTCGAAACCTCAACGCTAGGTCGGTTCCACCACCAAAGACTCGACTTTAAACGCTGCGTTCCAACATTCTTAACCTCACACAAGACCCTTTTTATGGTTCTATGGATCGCTGCATTTTTATCGGTTTTTATTTGGCAGAGAAATATGGTGGGTGGTGGGTTTTTGGTTTTCGGGCGGGTTCCGGTCCGGCCGATTCCGAAGATGAGACCGGTGGTTTTTAATTTGACGGATTTTGGTGGAGTGGGTGATGGGGTTACTGTTAATACTGAAGCGTTTGAGAGAGCTGTTTATGCTATATCTAAATTGGGGAAGAAAGGTGGGGGCCAGTTGAATGTTCCTCCCGGTCGTTGGCTCACTGCTCCCTTTAATCTTACCAGCCATATCACTCTGTTTCTAGCTCAAGATGCTGTTATTCTTGGCATTGATGATGAGAAGTATTGGCCACTAATGCCTCCATTACCTTCGTATGGGTATGGAAGGGAGCGTCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAGAATCTTAAAGATGTTGTGATAACAGGGCATAATGGCACCATAAATGGACAAGGACTGGCATGGTGGAAAAAATTTCGCCAGAAGCGTCTCAACTACACAAGGGGACCACTTGTTCAGATCATGTGGTCTAGTGACATTGTAATCACTGATATTACTCTACGTGACTCTCCTTTTTGGACGCTGCATCCATATGACTGCAAAAACATTACAATAAAAGGTGTTACAATTTTGGCTCCTGTATTTGAAGCTCCAAACACTGACGGCATAGATCCTGACTCTTGCGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATAGCAATAAAGAGTGGTTGGGATCAGTATGGAATTGCTTATGGAAGACCTTCCATGAATATAATGATCAGAAACCTCATTGTTCGTTCTATGGTCAGTGCTGGTATCTCAATAGGCAGTGAGATGTCTGGTGGGATATCCAACGTCACGGTAGAGAATCTTCTTGTGTGGGATTCTAGGCGAGGTGTGAGGATAAAGACTGCACCTGGACGAGGAGGATATGTGCGGCAAATAACTTATCGGAATATAACGTTTGAGAATGTCCGTGTAGGAATTGTGATGAAGACAGATTACAATGAACACCCTGATGACGGATATGACCCTACGGCACTTCCAGACATAAGAGACATTAGCTTCACTAGTGTCTATGGCCATGGAGTTCGTGTGCCTGTACGTATTCATGGTAGTGAAGAGATTCCTGTGAGAAATGTAACTTTTCGTGACATGTCAGTTGGGTTAACCTACAAGAAGAAGCACATCTTTCAGTGTGCATTTGTACATGGTCGCGTAATAGGGACCATTTTCCCGTCTCCATGCGAGAACCTTGATCGGTACAATGAGCAAGGACAACTGGTTAAACATTCCATGTCCCAGAATGTAACAGATATAGATTATGATTTTTGA 1479 0.4395 MVETSTLGRFHHQRLDFKRCVPTFLTSHKTLFMVLWIAAFLSVFIWQRNMVGGGFLVFGRVPVRPIPKMRPVVFNLTDFGGVGDGVTVNTEAFERAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHITLFLAQDAVILGIDDEKYWPLMPPLPSYGYGRERPGPRYGSLIHGQNLKDVVITGHNGTINGQGLAWWKKFRQKRLNYTRGPLVQIMWSSDIVITDITLRDSPFWTLHPYDCKNITIKGVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLIVRSMVSAGISIGSEMSGGISNVTVENLLVWDSRRGVRIKTAPGRGGYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPTALPDIRDISFTSVYGHGVRVPVRIHGSEEIPVRNVTFRDMSVGLTYKKKHIFQCAFVHGRVIGTIFPSPCENLDRYNEQGQLVKHSMSQNVTDIDYDF* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5097 492 Pfam Glycosyl hydrolases family 28 170 452 IPR000743 GO:0004650|GO:0005975
Mal5g5097 492 SUPERFAMILY Pectin lyase-like 65 465 IPR011050 -
Mal5g5097 492 SMART pbh1 421 442 IPR006626 -
Mal5g5097 492 SMART pbh1 241 268 IPR006626 -
Mal5g5097 492 SMART pbh1 394 416 IPR006626 -
Mal5g5097 492 SMART pbh1 303 325 IPR006626 -
Mal5g5097 492 SMART pbh1 360 381 IPR006626 -
Mal5g5097 492 SMART pbh1 331 352 IPR006626 -
Mal5g5097 492 SMART pbh1 269 290 IPR006626 -
Mal5g5097 492 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 21 490 - -
Mal5g5097 492 PANTHER PECTIN LYASE-RELATED 21 490 - -
Mal5g5097 492 Gene3D - 63 453 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5097 Mal-Chr5 124716546 124720700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5097 9 491 Glycoside Hydrolase AT1G19170 75.758 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5097 - - gmx:100818529 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5097 5 124716546 124720700 Mal5g5097 5 124716546 124720700 ECH
Mal5g5097 5 124716546 124720700 Mal4g2916 4 84594662 84606324 PCT