Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2916 ATGGTGGTGTTTCAAACACACAAGAGTACAAGTTTCTTCTTTGTTTTTCTAATAGTTGCAGCACTTGGTTCTGTTTTTCTGGTGTGGCAGAGGAATGTGATTAATGGGTTTTTGGTGTTGGGTGGGGAATTGGATTGGGAGTCACCAAAGCTGAGACCTGTGGTTTTTAATTTGACTGATTTTGGTGGTGTTGGTGATGGTGTTACTCTTAATACTAAGGCTTTTGAAAATGCTGTTTCTGTTATTTCTAAGTTTAGGAATAAAGGTGGTGCTCAGTTGAATGTGCCACCTGGTTTTTGGCTTACTGCTCCCTTTAATCTTACTAGTTCTATGACACTTTTTCTAGCTCATGGTGCTGTCATTCTTGGAGTTCAGGATGAAAAGTATTGGCCATTGATATCTGCATTGCCTTCATATGGGTATGGTAGGGAGCATCCCGGGCCGCGGTATAGCAGTTTGATTCACGGTCAAAATCTTAGAGATGTTGTGATAACAGGACATAATGGTACCATAAATGGACAGGGACAAACGTGGTGGACAAAACATCTCCATAAGCTTCTCAACCACACAAGGGGGCCACTAGTTCAGATCATGTGGTCTAGTGACATTGTGATCTCAAATATCACTCTTCGTGACTCTCCTTTTTGGACTCTCCATCCATATGACTGCAAGAATGTTACAATAAAAAATGTTACGATATTGGCTCCTGTATATCATGCTCCAAATACTGATGGCATAGATCCAGGCAAGTATCTTGATATGTTGATAGAGGATTGTTACATAAGTGTCGGGGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAATATGGAATTGCTTATGGAAAGCCTTCTAAGAACATATTAATCCGAAACCTCGTTGTTCGTTCTAATGTCAGTGCTGGCATCTCAATAGGAAGTGAAATGTCCGGTGGAGTATCCAATGTCACCATTGAGAACATTCTTGTATGGGAATCTAGACGTGCCATAAGGATCAAAACCGCGCCTGGAAGAGGAGGATACGTTCAGCAAATAACTTACCGGAATCTAACTTTCCACAACGTCCGTGTTGGAATTGTTATCAAGACCGATTACAACGAACACCCTGATGCTGGATATGACCCTACAGTACTTCCAGTTCTCAGAGACATAAGCTTCACTGGTATCCGAGGTGAGGGAGTTCGTGTACCGGTACGCATTCAAGGTAGCGAAGAGATTCCAGTTAGAAACGTGACTTTCCAGGATATGAATGTTGGGATAACATACAAAAAGAAGCATATATTCCAATGTGCCTTTGTGGAAGGTCAGGTAATAGGGACCATTTTCCCAAAACCATGTAGGAATTTTGATCAGTACAATGAGCAAGGAGAGTTGGTTAAGCATGCTGTGTCACAGAATGTAACAGATATAGATTATGAAATTTGA 1425 0.4126 MVVFQTHKSTSFFFVFLIVAALGSVFLVWQRNVINGFLVLGGELDWESPKLRPVVFNLTDFGGVGDGVTLNTKAFENAVSVISKFRNKGGAQLNVPPGFWLTAPFNLTSSMTLFLAHGAVILGVQDEKYWPLISALPSYGYGREHPGPRYSSLIHGQNLRDVVITGHNGTINGQGQTWWTKHLHKLLNHTRGPLVQIMWSSDIVISNITLRDSPFWTLHPYDCKNVTIKNVTILAPVYHAPNTDGIDPGKYLDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSKNILIRNLVVRSNVSAGISIGSEMSGGVSNVTIENILVWESRRAIRIKTAPGRGGYVQQITYRNLTFHNVRVGIVIKTDYNEHPDAGYDPTVLPVLRDISFTGIRGEGVRVPVRIQGSEEIPVRNVTFQDMNVGITYKKKHIFQCAFVEGQVIGTIFPKPCRNFDQYNEQGELVKHAVSQNVTDIDYEI* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2916 474 Pfam Glycosyl hydrolases family 28 151 433 IPR000743 GO:0004650|GO:0005975
Mal4g2916 474 SUPERFAMILY Pectin lyase-like 47 447 IPR011050 -
Mal4g2916 474 PANTHER PECTIN LYASE-RELATED 9 472 - -
Mal4g2916 474 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 9 472 - -
Mal4g2916 474 SMART pbh1 403 424 IPR006626 -
Mal4g2916 474 SMART pbh1 342 363 IPR006626 -
Mal4g2916 474 SMART pbh1 376 398 IPR006626 -
Mal4g2916 474 SMART pbh1 223 250 IPR006626 -
Mal4g2916 474 SMART pbh1 251 272 IPR006626 -
Mal4g2916 474 SMART pbh1 313 334 IPR006626 -
Mal4g2916 474 SMART pbh1 285 307 IPR006626 -
Mal4g2916 474 Gene3D - 43 437 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2916 Mal-Chr4 84594662 84606324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2916 4 474 Glycoside Hydrolase AT3G42950 71.222 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2916 - - gmx:100791187 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5097 5 124716546 124720700 Mal4g2916 4 84594662 84606324 PCT