Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4872 ATGCTAGTGGCATTGGTGTTGCTGCTGCTGGCATTGAGCAGTGAAGTGAGAGTGAATGGTGAAAGAGGTGATAGGCAATGTGAATTCAATCCATCACTAAAGCCAAGACCACACAGTGTATCCATTTTGGAGTTTGGTGCAGTTGGTGATGGTAAAACATTGAACACCATTGCATTTCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGACAAAGGTGGTGCTCAGCTATATGTACCCCCTGGAACATGGCTTACTCAAAGTTTCAATCTCACTAGCCATCTTACCCTCTTTTTGGAAAAAGGCGCGGTCATTATTGGATCTCAGGATCATTATAACTGGGATGTTGTTGATCCTTTACCGTCTTATGGCCGAGGACTAGAAGTTCCTGGAGGAAGATATCAGAGCTTGATAAATGGATACATGTTACAGGATGTGGTCATAACAGGTAATAATGGAACCATTGATGGCATGGGATCGACTTGGTGGGAATCATTTAGGTCTCATTCTTTGAACTATAGCCGTCCTCATCTGGTTGAATTAGTGGCATCTAGTGATGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCTGCATATAACATCCACCCAGTTTATTGCAGAAATGTACATATTCATAATATTTCAATCCTTGCTCCTCCAGAATCCCCTTATACTGTTGGCATAGTACCAGATTCCTCTGATCATGTTTGCATAGAGGATTGTACCATTGATACCGGCTATGATGCAATTGCCCTAAAAAGCGGCTGGGACGAGTACGGAATCGCCTATGGCAGGCCTACCGAGAATGTACATATCAGAAGGGTGCATCTACAAGCATCTTATGGGTCTACTCTTGCATTTGGCAGTGACATGTCAGGTGGAATTTCAAATGTTGTTGTAGAACATGTTCATCTCTACAACTCAAAAGGTGGCATTGAGTTCAGAACTATTAGAGGAAGAGGTGGTTATATGAAGGAAATAATTTTATCAGACATAGAAATGAAGAATATATACACAGCAATATCTGCCACAGGTTATTGTGGTTCTCATCCTGATGACAAATTTGATCCAAATGCTTTGCCACTTTTGGATCACTTTATTTTCCAAGATATAATTGGAACGAACATCACTATTGCTGGAAGCTTTGCTGGACTACAAGAATCTCCATTCACCAACATATGCTTATCCAATATAACCTTGTCTGTAAATTATGCTTCCTCCACTACTTGGAATTGTTCAAATGTATCTGGATTTTCAGATTCTGTTCTCCCTAAACCTTGTCCTGATCTTGATAGCCCTTCACATTATTCCTCATCTTGTCTCTCTATGTTGAGTATGAAAGGGAGAAGTGAGGTGGTGTCCGGCTTGAGGTCGATGAAAAGGTGA 1389 0.4096 MLVALVLLLLALSSEVRVNGERGDRQCEFNPSLKPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVIIGSQDHYNWDVVDPLPSYGRGLEVPGGRYQSLINGYMLQDVVITGNNGTIDGMGSTWWESFRSHSLNYSRPHLVELVASSDVVVSNLTFLNAPAYNIHPVYCRNVHIHNISILAPPESPYTVGIVPDSSDHVCIEDCTIDTGYDAIALKSGWDEYGIAYGRPTENVHIRRVHLQASYGSTLAFGSDMSGGISNVVVEHVHLYNSKGGIEFRTIRGRGGYMKEIILSDIEMKNIYTAISATGYCGSHPDDKFDPNALPLLDHFIFQDIIGTNITIAGSFAGLQESPFTNICLSNITLSVNYASSTTWNCSNVSGFSDSVLPKPCPDLDSPSHYSSSCLSMLSMKGRSEVVSGLRSMKR* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4872 462 Pfam Glycosyl hydrolases family 28 137 417 IPR000743 GO:0004650|GO:0005975
Mal5g4872 462 SUPERFAMILY Pectin lyase-like 32 431 IPR011050 -
Mal5g4872 462 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 3 447 - -
Mal5g4872 462 Gene3D - 26 422 IPR012334 -
Mal5g4872 462 PANTHER PECTIN LYASE-RELATED 3 447 - -
Mal5g4872 462 SMART pbh1 234 255 IPR006626 -
Mal5g4872 462 SMART pbh1 296 317 IPR006626 -
Mal5g4872 462 SMART pbh1 268 290 IPR006626 -
Mal5g4872 462 SMART pbh1 207 233 IPR006626 -
Mal5g4872 462 SMART pbh1 184 206 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4872 Mal-Chr5 121947205 121950190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4872 1 431 Glycoside Hydrolase AT3G06770 62.299 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4872 - - gmx:100802343 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4872 5 121947205 121950190 Mal5g4872 5 121947205 121950190 ECH
Mal5g4872 5 121947205 121950190 Mal4g3710 4 109445465 109448823 PCT