Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3710 ATGCTTGTGGCATTGCTCTTGCTTCTTGCATTGAGCAATGCCGTGAATGTTTATGGAGATGTTGAGATATGTGGTTCGAATCCTAAATTAGATCCTAGACCACACAGTGTCTCTATTTTGGAGTTTGGTGCAGTTGGAGATGGTAAAACATTGAATACCATTGCATTCCAGAATGCAATTTTTTATCTCAAGTCATTTGCTGATAAGGGCGGTGCTCAGCTCTACGTTCCACCAGGAAAATGGCTCACTGGTAGTTTCAATCTTACCAGCCATCTCACCCTCTTTTTGGAGAAAGGTGCTGTCATTATTGGATCTCAGGATCCAGCTCATTGGAATGTTATTGAAGCTTTACCTTCTTATGGCCGAGGGAAAGATGTTCCTGACGGAAGATACAAGAGCTTGATAAATGGTAACAAGTTGGAGGATGTGGTCATAACAGGCAATAATGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAGTGGTATAAGTCTCATTCCCTTAACCACAGTCGTCCTCATCTGGTTGAAATTATATCATCTGATTTTGTGGTAGTTTCAAATCTTACATTCTTGAATGCTCCAGCATATAGCATCCACCCTGTTTATTGCAGCAATGTACATATTCAAAACATTTCAATCTCTACTCCTCCAGAATCCCCTTATACTGCTGGTATAGTACCAGATTCTTCTGATAATGTTTGTATAGAAGATTGTATTGTTTCCATTGGTTTTGATGCAATTTCTCTCAAAAGTGGATGGGATCAGTATGGCATTACCTATGGAAGACCGACTGAGAAAGTACATATAAGAAGGGTTCATCTTCGTGCGTTTACTGGCTCTGCTATTTCATTTGGTACTGAAATGTCCGGTGGAATTTCAAATGTTCTAATAGAGCATGTTAACATTTTCAACTCAAACAGTGGCATTGAGTTCAGAACAACCAAAGGAAGAGGTGGTTACATAAAAGAAATTGCTATATCAAACATAGAAATGGAAAATGTTTATACTGCGATTTCGGCCAAAGGTAATTCTGGTTTTCATCCTGATGACAAATTTGATCCAAAAGCACTTCCATTTTTGGATCACATTACTTTGAAGGATATTACTGGAAAAAATATCACAATTGCAGGAAGCTTATCCGGTATAGAAGAATCACCCTTCACAAACATATGCCTTTCAAATATAACCTTGTCTACAAATTCTGTTTCTTCAAATAAATGGGAATGCTCAAATGTCTCAGGATTTTCAGACTCAGTGTTGCCTAAACCTTGTCAAGAACTTGGTAACCCTTCAAATTCTTCGTCATCGTCATGTTTCTATCTCATGAGTCTCGGTCGAAAAACTGCAGGGATTTAA 1359 0.387 MLVALLLLLALSNAVNVYGDVEICGSNPKLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPAHWNVIEALPSYGRGKDVPDGRYKSLINGNKLEDVVITGNNGTIDGMGMVWWEWYKSHSLNHSRPHLVEIISSDFVVVSNLTFLNAPAYSIHPVYCSNVHIQNISISTPPESPYTAGIVPDSSDNVCIEDCIVSIGFDAISLKSGWDQYGITYGRPTEKVHIRRVHLRAFTGSAISFGTEMSGGISNVLIEHVNIFNSNSGIEFRTTKGRGGYIKEIAISNIEMENVYTAISAKGNSGFHPDDKFDPKALPFLDHITLKDITGKNITIAGSLSGIEESPFTNICLSNITLSTNSVSSNKWECSNVSGFSDSVLPKPCQELGNPSNSSSSSCFYLMSLGRKTAGI* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3710 452 PANTHER PECTIN LYASE-RELATED 2 446 - -
Mal4g3710 452 SUPERFAMILY Pectin lyase-like 32 428 IPR011050 -
Mal4g3710 452 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 446 - -
Mal4g3710 452 SMART pbh1 231 252 IPR006626 -
Mal4g3710 452 SMART pbh1 204 230 IPR006626 -
Mal4g3710 452 SMART pbh1 181 203 IPR006626 -
Mal4g3710 452 SMART pbh1 265 287 IPR006626 -
Mal4g3710 452 SMART pbh1 293 314 IPR006626 -
Mal4g3710 452 SMART pbh1 393 444 IPR006626 -
Mal4g3710 452 SMART pbh1 322 343 IPR006626 -
Mal4g3710 452 Pfam Glycosyl hydrolases family 28 132 414 IPR000743 GO:0004650|GO:0005975
Mal4g3710 452 Gene3D - 22 419 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3710 Mal-Chr4 109445465 109448823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3710 1 440 Glycoside Hydrolase AT3G16850 64.626 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3710 - - gmx:100777503 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g3710 4 109445465 109448823 Mal4g3710 4 109445465 109448823 ECH
Mal5g4872 5 121947205 121950190 Mal4g3710 4 109445465 109448823 PCT