Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4859 ATGGCCATTGCAAAGAGTGTTGTTATTCTTATTTTGTTCTTTGCATTGGTCAGTTATGCAGATGCTGCTGTTAAACCAAGGCCACCCGTTGGTCGTGATGTTTTCGGAGGTAAAAATCACGCTAAGGATGCCCTCCTTCCCGGGGAGAAAATAGTTAATGTCTTGAGTTTTGGCGCCAAAGGTGATGGTGTGTTTGATTGCACTCAGGCTTTCATGACGGCATGGCAAGCAGTCTGCAAAGCCCCGGGACAAAACCGGCTTTTAGTTCCTGCTGGTAAATTTTTGGTTTCTTCAATTGTTTTTGCCGGACCATGTCTTGCTCCAAATCCAGTAACAATTCAAGTGGAAGGAACTATTTTGGGTAGCACCGACATTTCTGAGTATGTAGACAATAGATGGCTTAGTTTTGAAAATATAAATGGCCTTAAAATCGTTGGTGGAGGTACTTTTGATGGACAAGGTCAAGAATCATGGCCATACGCTGAGAAATGTGAGGGCTCCAAAAGCACTTGTGTGCTAAATCCCCCTAGTTTATATTTGACAAACGTGCAAAATGCAATTATATCGGGCATTAAATCATTGAATCCCAAAGGATTTCACATATTTGTTACTCAATGTTCAAACATTAGGTTGCGCTTACTTAAACTCATTGCACCTGAAACCAGTCCAAACACTGATGGTATTCATATTAGCACCTCCTTCAATGTGAAAATAAATAAATGCACCATTGCAACCGGGGATGATTGTATCGGTATGATAAGCGGTACTGAACAGGTTTCCATCAACAGACTCAAGTGTGGACCTGGACATGGTATCAGCGTTGGTAGTCTTGGAAATATTAAAGATGAGCGAGAGGTGAATGGTATCACCGTAAAGAACAGTGAATTGATTGGCACAGACAACGGTTTGAGAATAAAAGCATTTCCAGAGAGACATATTGGTGGAGCATCAATGATAAGTTTCACTAACATTAACATGACAAATGTAAAAAATCCAATCATTATTGACCAGGAGTATCAATGTTCTGCAAACTGCCAAAAACAGCCTTCATTGGTGAAGATCGCAAATATTCATTTTACAAATATAAGGGGAACTTCATCTTCAGCAATTGCAGTGGATCTGAGATGCAGCAAGCTACATCCATGCACGGGTGTTACATTTCGTGACATCGACCTAAAGTTTGGATCAGGCCCAGCCACATCTAGATGTGTCAATGTTAAGCCTGTCTATGCTGGCTTGATAAACCCACCAGCTTGCCCATAA 1263 0.4117 MAIAKSVVILILFFALVSYADAAVKPRPPVGRDVFGGKNHAKDALLPGEKIVNVLSFGAKGDGVFDCTQAFMTAWQAVCKAPGQNRLLVPAGKFLVSSIVFAGPCLAPNPVTIQVEGTILGSTDISEYVDNRWLSFENINGLKIVGGGTFDGQGQESWPYAEKCEGSKSTCVLNPPSLYLTNVQNAIISGIKSLNPKGFHIFVTQCSNIRLRLLKLIAPETSPNTDGIHISTSFNVKINKCTIATGDDCIGMISGTEQVSINRLKCGPGHGISVGSLGNIKDEREVNGITVKNSELIGTDNGLRIKAFPERHIGGASMISFTNINMTNVKNPIIIDQEYQCSANCQKQPSLVKIANIHFTNIRGTSSSAIAVDLRCSKLHPCTGVTFRDIDLKFGSGPATSRCVNVKPVYAGLINPPACP* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4859 420 SUPERFAMILY Pectin lyase-like 48 419 IPR011050 -
Mal5g4859 420 PANTHER - 2 419 - -
Mal5g4859 420 Pfam Glycosyl hydrolases family 28 79 407 IPR000743 GO:0004650|GO:0005975
Mal5g4859 420 SMART pbh1 233 276 IPR006626 -
Mal5g4859 420 SMART pbh1 382 408 IPR006626 -
Mal5g4859 420 SMART pbh1 349 374 IPR006626 -
Mal5g4859 420 SMART pbh1 183 232 IPR006626 -
Mal5g4859 420 SMART pbh1 286 307 IPR006626 -
Mal5g4859 420 Gene3D - 42 415 IPR012334 -
Mal5g4859 420 PANTHER POLYGALACTURONASE 2 419 - -
Mal5g4859 420 ProSitePatterns Polygalacturonase active site. 263 276 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4859 Mal-Chr5 121817799 121819461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4859 51 419 Glycoside Hydrolase AT4G18180 42.746 1.50e-99 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4859 K01213 - gmx:106796220 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4859 5 121817799 121819461 Mal5g4859 5 121817799 121819461 ECH
Mal5g4859 5 121817799 121819461 Mal4g3685 4 108731915 108734627 PCT