Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3685 ATGGGCCTTATTTACATTTACCTGCAGGCTTTCATGGATGGATGGCAAGCAGCCTGCAAGTCCAAAGTGCAAGCCAGGCTTCTAATCCCTCAAGGCAGATTCCTTGTTTCTTCAATGTTCTTTGCAGGCCCATGTTTGACTCCAGGGCCCATAACAATCCAAGTTGTAGGTACAGTTGTGGCCACAACAGATATCAGTGAGTATGAGAATGGTGAATGGCTCATGTTTCAGAACATAGCTGGCCTAAAACTTCTTGGTGGAGGTACTTTTGATGGGCAGGGTATGTCTGCATGGAAACATAATGAAGACTGTGATTCTGACCCAACCAACCAATGTGTTAGGGCACCTAGTAGCATTTATTTTAACAAAGTTACAGATGGAATTATACAGAACATCAAATCTGTAGACCCAAAAGGCTTTCACATATTTGTGACTAACTCTGCAAACATTAGACTTCGATTAATTAAGATCAATGCACCAGCTACAAGCCCAAATACTGATGGCCTTCATATAAGCCACTCAATCAATGTTAAAATATCCAGAAGCAGTGTTGAAACAGGAGATGATTGTGTCTCCATGATACAAGGAGTCAGTAATGTTACTATCAAGAGAGTCAGGTGTGGTCCAGGACATGGTATCAGTGTTGGAAGTCTTGGAAAGTATCCAGATGAATTAGAGGTGAATGGCATTAGAGTCCAAAGCTGCACATTAATTGGCACAACCAATGGCCTCAGAATAAAATCATGGCCAGATAAGTATCCAGGTGCAGCAACAGATATCAATTTCAGTGACATTACAATGGAAAATGTTAAAAATCCTATCATCATTGACCAAGAGTATCAATGTGATCCAAATTGCCAAAAGAAGCCTTCACTTGTGAAGATAAAAAATATAGGTTTTACAAATATAAGGGGAACCACAAGTTCTCCAATTGCAGTGGACTTAAGGTGTAGCAAGCTATTCCCTTGCCAAAATGTTCAACTTCACAATATAGACCTCAAGATTGGAACCAAGCCTTCTGGCTCTAGATGTGCCAACATCAAACCTATCTATGGTGGCTTGCAAACACCACCAGCTTGTGCATAG 1086 0.4088 MGLIYIYLQAFMDGWQAACKSKVQARLLIPQGRFLVSSMFFAGPCLTPGPITIQVVGTVVATTDISEYENGEWLMFQNIAGLKLLGGGTFDGQGMSAWKHNEDCDSDPTNQCVRAPSSIYFNKVTDGIIQNIKSVDPKGFHIFVTNSANIRLRLIKINAPATSPNTDGLHISHSINVKISRSSVETGDDCVSMIQGVSNVTIKRVRCGPGHGISVGSLGKYPDELEVNGIRVQSCTLIGTTNGLRIKSWPDKYPGAATDINFSDITMENVKNPIIIDQEYQCDPNCQKKPSLVKIKNIGFTNIRGTTSSPIAVDLRCSKLFPCQNVQLHNIDLKIGTKPSGSRCANIKPIYGGLQTPPACA* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3685 361 PANTHER - 7 361 - -
Mal4g3685 361 ProSitePatterns Polygalacturonase active site. 204 217 IPR000743 GO:0004650|GO:0005975
Mal4g3685 361 SUPERFAMILY Pectin lyase-like 9 360 IPR011050 -
Mal4g3685 361 SMART pbh1 257 278 IPR006626 -
Mal4g3685 361 SMART pbh1 197 217 IPR006626 -
Mal4g3685 361 SMART pbh1 227 248 IPR006626 -
Mal4g3685 361 SMART pbh1 174 195 IPR006626 -
Mal4g3685 361 SMART pbh1 147 173 IPR006626 -
Mal4g3685 361 Gene3D - 8 354 IPR012334 -
Mal4g3685 361 Pfam Glycosyl hydrolases family 28 19 348 IPR000743 GO:0004650|GO:0005975
Mal4g3685 361 PANTHER POLYGALACTURONASE 7 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3685 Mal-Chr4 108731915 108734627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3685 7 360 Glycoside Hydrolase AT4G18180 45.699 2.86e-104 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3685 K01213 - gmx:106796220 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4859 5 121817799 121819461 Mal4g3685 4 108731915 108734627 PCT