Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4146 ATGGAATATCAAAGATCCTTAAGCAACGATTCTAATAACTTCCAAAAAGAGTTAACCACCACACGTACTCTTTCTTCACAGTACAGCCTCGCATCAGTTCCTTCTCTCAACTCAAACTCACAGCAATTTCATAATTCTTCCTTCAAATGCCTCACAACTCTCAAATTCCACACTTACATATCCTCTTTAACACTTGTAGGAAAATTCCTCTACACTGGTTCATCCAACACAGAACTCACATCATGGAACCTTTCCCATGTTCATTCTCACCCTCAACAATTAATTATCACTAACACAATAGAATCTGGAAATGGTGCTGTGAAATCCATTGTAGTTCATTCAGACAAGCTTTTCACAGCACACCAAGATAACAAAATCCGCGTTTGGAAAATCACCGTTACCAATAATAACGAATCTCAACAACAAAAATTTATCCATTTAGCCACACTCCCAACATTCATAGACCGTTTCTCGAAAATCTTTATCCCAAAAAACCACGTTAAGATTCGAAGGCACAAAAAATGCACTTGGGTTCACCATGTTGACACAGTCTCATCCCTGGCCTTATCTAAAGACGGAACCTTGTTGTATTCTGTTTCATGGGACAGAACAATCAAGGTTTGGAAAACCAAAGACTTCACATGTTTGGAATCAGTGCAAAACGCACACGACGATGCAATAAACGCAATCACAGTTTCTAATGACGGATATGTTTACACCGGATCAACAGATAAAAAAATTAAGGTTTGGAAGAAAGATAAAGGAGAGAAGAAACATTTGTTAGTTGATACATTGGAAAAACACAGGTCTGGGATTAATGCATTGGCTCTTAACAGTGATGGTTCTGTTTTATATTCTGGTGCATGTGATAGATCAATATTAGTATCTGAAAAAGGTGAAAATGGTAATTTGGTAGTCATAGGTGCTCTTCGTGGTCACACAAAGTCTATATTGTGTTTGGCTGTGATTTCTGATTTGGTGTGCAGTGGTTCTGAAGATAAGACAATTCGAATTTGGCGAGGTAATACTAATAATGTTGTTAGAGAGTATTGTTGTTTGAGTGTTTTGGAAGGGCATAAAGGTCCAATTAAGTGCCTAACTGCTGTGCTTGATCACTTTGATCAACTGTCTGAAGCATCTTTTCTTATCTATAGTGGAAGTTTAGACTGTGATAATAAGGTTTGGAAGATTTTTGTTCCACTTCTATAA 1209 0.373 MEYQRSLSNDSNNFQKELTTTRTLSSQYSLASVPSLNSNSQQFHNSSFKCLTTLKFHTYISSLTLVGKFLYTGSSNTELTSWNLSHVHSHPQQLIITNTIESGNGAVKSIVVHSDKLFTAHQDNKIRVWKITVTNNNESQQQKFIHLATLPTFIDRFSKIFIPKNHVKIRRHKKCTWVHHVDTVSSLALSKDGTLLYSVSWDRTIKVWKTKDFTCLESVQNAHDDAINAITVSNDGYVYTGSTDKKIKVWKKDKGEKKHLLVDTLEKHRSGINALALNSDGSVLYSGACDRSILVSEKGENGNLVVIGALRGHTKSILCLAVISDLVCSGSEDKTIRIWRGNTNNVVREYCCLSVLEGHKGPIKCLTAVLDHFDQLSEASFLIYSGSLDCDNKVWKIFVPLL* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4146 402 Pfam WD domain, G-beta repeat 218 251 IPR001680 GO:0005515
Mal5g4146 402 Pfam WD domain, G-beta repeat 263 294 IPR001680 GO:0005515
Mal5g4146 402 Pfam WD domain, G-beta repeat 178 209 IPR001680 GO:0005515
Mal5g4146 402 Pfam WD domain, G-beta repeat 308 339 IPR001680 GO:0005515
Mal5g4146 402 SUPERFAMILY WD40 repeat-like 46 397 IPR036322 GO:0005515
Mal5g4146 402 Gene3D - 166 399 IPR015943 GO:0005515
Mal5g4146 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 260 IPR001680 GO:0005515
Mal5g4146 402 Gene3D - 28 150 IPR015943 GO:0005515
Mal5g4146 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 339 - -
Mal5g4146 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 209 - -
Mal5g4146 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 251 - -
Mal5g4146 402 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Mal5g4146 402 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Mal5g4146 402 PRINTS G protein beta WD-40 repeat signature 238 252 IPR020472 -
Mal5g4146 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Mal5g4146 402 SMART WD40_4 93 130 IPR001680 GO:0005515
Mal5g4146 402 SMART WD40_4 170 209 IPR001680 GO:0005515
Mal5g4146 402 SMART WD40_4 212 251 IPR001680 GO:0005515
Mal5g4146 402 SMART WD40_4 47 83 IPR001680 GO:0005515
Mal5g4146 402 SMART WD40_4 303 340 IPR001680 GO:0005515
Mal5g4146 402 SMART WD40_4 258 297 IPR001680 GO:0005515
Mal5g4146 402 SMART WD40_4 349 396 IPR001680 GO:0005515
Mal5g4146 402 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 402 IPR045182 -
Mal5g4146 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 349 IPR001680 GO:0005515
Mal5g4146 402 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4146 Mal-Chr5 111887692 111888900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4146 222 396 Acyl Lipid Metabolism Gene Families AT3G18860 28.415 6.47e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4146 - - gmx:100801906 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4146 5 111887692 111888900 Mal2g2346 2 29161484 29162746 ECH
Mal5g4146 5 111887692 111888900 Mal5g4146 5 111887692 111888900 ECH
Mal5g4146 5 111887692 111888900 Mal2g2346 2 29161484 29162746 PCT