Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2346 ATGGAATATCACTATGATAGTGGCTCTTCCTCATCTCACTCCAACCACTACCTTCAACCATCTGGGTCAACCTCCCTCACTTCACAACGCAGTCTTCTCTCAGTCCCTTCCCTCAACCCTCGTCACAACCACCACAACAACCACACTTACCACCTCATCACAACCCTCAAAAACCACCACAATACTTCCTACACATCCTCTCTCACCCTCTTCGGAAAATTCCTCCTCACCGGTTCATCCGACAGAGAAATCACAACATGGAACAGAACCACCCATGAAGAAGAAGAAGAACATGAACAACAAAACACAACAACAAACAACAAAGTAATAGCAGGAAAAGGTGCTGTTAAATCCTTAGTAATTCAATCAAACACAAACACCCTTTTCAGTGCTCATCAAGACCATAAAATCCGTGTTTGGAAATTAACCAATGACCAAACAAAATACACTCATTTAGCAACACTTCCAACACTTGGTGACCGTGCTTCCAAAATCTTAATCCCAAAAAACCATGTCCAAATTCGTAGACACAAAAAATGCACGTGGGTTCATCACGTTGACACTGTTTCTTCACTTGCTCTGTCTAAAGATGGTAACTTATTGTACTCTGTTTCATGGGACAGAACAATCAAAATCTGGAAAACTAAAGATTTCACTTGTTTGGAATCAATAACCAACGCACACGATGATGCTATAAACGCGGTTGTAGTTTCTTATGATGGAACTGTCTACAGTGGATCAGCTGATAAAAGAATCAAAGTATGGAAAAATCTCCAAGGTGATGATCATAACAAAAAGAAACATAAACATTCTCTTGTTGATACCTTGGAGAAACATAATTCTGGAATCAATGCTTTGGTTTTGAGCAGTGATGAATCTATTCTGTATTCTGGTGCTTGTGATAGATCAATATTGGTTTGGGAGAAAGAAGACGACGGCGACGACGACGACGATGAAGATGGAAAAATGGTTCTGGTTGGTGCTTTAAGAGGACACAAAAATTCGATATTGTGTTTAGCTGTTGTATGGGATTTGGTGTGTAGTGGTTCAGCTGATAAAACCATAAGAATTTGGAGAGGTGTTGGTAGAGATTATTGTTGTTTGTCTGTTTTAGAAGGACATCAAGGTTCAATTAAATGTTTAACTGCAGTGGTTGAACATTGTGATGATACATCGGAATCAGAAGAAGCATCTTTTCTAGTTTACAGTGGTAGTTTGGATTGTGACATTAAGGTTTGGCAGATTTTTGTTCCTGCTATCTAA 1263 0.3935 MEYHYDSGSSSSHSNHYLQPSGSTSLTSQRSLLSVPSLNPRHNHHNNHTYHLITTLKNHHNTSYTSSLTLFGKFLLTGSSDREITTWNRTTHEEEEEHEQQNTTTNNKVIAGKGAVKSLVIQSNTNTLFSAHQDHKIRVWKLTNDQTKYTHLATLPTLGDRASKILIPKNHVQIRRHKKCTWVHHVDTVSSLALSKDGNLLYSVSWDRTIKIWKTKDFTCLESITNAHDDAINAVVVSYDGTVYSGSADKRIKVWKNLQGDDHNKKKHKHSLVDTLEKHNSGINALVLSSDESILYSGACDRSILVWEKEDDGDDDDDEDGKMVLVGALRGHKNSILCLAVVWDLVCSGSADKTIRIWRGVGRDYCCLSVLEGHQGSIKCLTAVVEHCDDTSESEEASFLVYSGSLDCDIKVWQIFVPAI* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2346 420 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 9 418 - -
Mal2g2346 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 223 IPR001680 GO:0005515
Mal2g2346 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 358 IPR001680 GO:0005515
Mal2g2346 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 214 - -
Mal2g2346 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 308 - -
Mal2g2346 420 Pfam WD domain, G-beta repeat 115 141 IPR001680 GO:0005515
Mal2g2346 420 Pfam WD domain, G-beta repeat 273 307 IPR001680 GO:0005515
Mal2g2346 420 Pfam WD domain, G-beta repeat 326 358 IPR001680 GO:0005515
Mal2g2346 420 Pfam WD domain, G-beta repeat 366 413 IPR001680 GO:0005515
Mal2g2346 420 Pfam WD domain, G-beta repeat 183 214 IPR001680 GO:0005515
Mal2g2346 420 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Mal2g2346 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Mal2g2346 420 Gene3D - 261 418 IPR015943 GO:0005515
Mal2g2346 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 256 IPR001680 GO:0005515
Mal2g2346 420 SUPERFAMILY WD40 repeat-like 48 415 IPR036322 GO:0005515
Mal2g2346 420 MobiDBLite consensus disorder prediction 1 46 - -
Mal2g2346 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 308 IPR001680 GO:0005515
Mal2g2346 420 Gene3D - 170 260 IPR015943 GO:0005515
Mal2g2346 420 SMART WD40_4 217 256 IPR001680 GO:0005515
Mal2g2346 420 SMART WD40_4 103 141 IPR001680 GO:0005515
Mal2g2346 420 SMART WD40_4 269 308 IPR001680 GO:0005515
Mal2g2346 420 SMART WD40_4 322 359 IPR001680 GO:0005515
Mal2g2346 420 SMART WD40_4 49 88 IPR001680 GO:0005515
Mal2g2346 420 SMART WD40_4 175 214 IPR001680 GO:0005515
Mal2g2346 420 SMART WD40_4 364 414 IPR001680 GO:0005515
Mal2g2346 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 329 358 - -
Mal2g2346 420 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 418 IPR045182 -
Mal2g2346 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 150 IPR001680 GO:0005515
Mal2g2346 420 PRINTS G protein beta WD-40 repeat signature 401 415 IPR020472 -
Mal2g2346 420 PRINTS G protein beta WD-40 repeat signature 346 360 IPR020472 -
Mal2g2346 420 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Mal2g2346 420 Gene3D - 45 167 IPR015943 GO:0005515
Mal2g2346 420 CDD WD40 52 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2346 Mal-Chr2 29161484 29162746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2346 185 358 Miscellaneous Gene Families AT5G08390 25.000 2.34e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2346 - - gmx:100777242 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4146 5 111887692 111888900 Mal2g2346 2 29161484 29162746 ECH
Mal2g2346 2 29161484 29162746 Mal2g2346 2 29161484 29162746 ECH
Mal5g4146 5 111887692 111888900 Mal2g2346 2 29161484 29162746 PCT