Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3988 ATGAGTAGGGAAATGGAATTTGAGCGTGTTCTTAGTTATTTTGATGAAGATGGTGACGGAAAGATTTCCCCGAATGAACTAAGGAGTCGAATGGCGAAGATTGGTGGAGAGTTTCAACTAATAGAAGCGGAAATTGCTATTGAGGCATTGGATTCTGATGGTGATGGTTTATTGAGTTTGGAGGATTTGATAACGCTAATGGAATCAGGAAGGGAGGAAGAAAAACTGAAGGATTTGAGGGAAGCTTTTGAAATGTATGATAGTGAAGGGTGTGGGTTCATAACACCAAAGAGTTTGAAAAGGATGTTGAAAAAATTAGGGGATTCTAAGTCTATTGAAGAATGTAAAGTGATGATTGGAAGGTTTGATTTGGATGGGGATGGTGTCCTTAGTTTTGAAGAATTCAGAATCATGATGGAGTGA 423 0.3853 MSREMEFERVLSYFDEDGDGKISPNELRSRMAKIGGEFQLIEAEIAIEALDSDGDGLLSLEDLITLMESGREEEKLKDLREAFEMYDSEGCGFITPKSLKRMLKKLGDSKSIEECKVMIGRFDLDGDGVLSFEEFRIMME* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3988 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Mal5g3988 140 CDD EFh 78 139 IPR002048 GO:0005509
Mal5g3988 140 CDD EFh 6 67 IPR002048 GO:0005509
Mal5g3988 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Mal5g3988 140 SMART efh_1 42 70 IPR002048 GO:0005509
Mal5g3988 140 SMART efh_1 6 34 IPR002048 GO:0005509
Mal5g3988 140 SMART efh_1 114 140 IPR002048 GO:0005509
Mal5g3988 140 SMART efh_1 78 106 IPR002048 GO:0005509
Mal5g3988 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Mal5g3988 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Mal5g3988 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Mal5g3988 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 3 140 - -
Mal5g3988 140 Gene3D - 72 140 - -
Mal5g3988 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 140 - -
Mal5g3988 140 SUPERFAMILY EF-hand 6 139 IPR011992 -
Mal5g3988 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Mal5g3988 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Mal5g3988 140 Gene3D - 1 71 - -
Mal5g3988 140 Pfam EF-hand domain pair 77 139 IPR002048 GO:0005509
Mal5g3988 140 Pfam EF-hand domain pair 9 67 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3988 Mal-Chr5 109581450 109581872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3988 3 139 EF-hand Containing Proteins AT1G76650 47.445 3.67e-37 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3988 K13448 - gmx:100816563 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3988 5 109581450 109581872 Mal2g2499 2 31673747 31674172 ECH
Mal5g3988 5 109581450 109581872 Mal5g3988 5 109581450 109581872 ECH