Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3984 ATGAACAACAATAACAATAATCCACCCAAGAATCCACCGCCACCGGCGCCACCGTCGTTTGTAGGTAATCATTCACCTATCTCTGTAAACCCACCGCAAATTCATCTTCTCACTCAATCTCACCCCCAAATGCAAAATTCTTCTCAATTCCCCGGTCATTTTCAGCTTTCACAACCCCAAAACCATGTAATTTCACAACAACACCCACAATTTTCAAACCCTCGTTCTCACCCTCAAACCCTACAACACCAGCAGCACCAGCAGCACCAACACCACCAGCAGCAGCAGCAACCATCTGTTAACCAAATGCAGAATAATACTAACACTAATGTGGCTTCTCCTGCAACTGGAACTGGAAGTACTAATTCATCTGCGAAGCGATCGCATCAGAAGTCGGGTTCGCGGCCACAAGGTTCACCGAGTGGAAACCAAACATCTGCCTTCAAGACTATGGAGTTAACACCTGCTCCTTTGAGAAAAAAGAGGAATTTACCGGAGAATTTGATACCGGAAAAGGTGGCTAAGATTGTACCTGAGTCTGGGATTTATACGCGGTTACTTGAACTTGAGGCGCAGATAGATTCTGCTTTGAATAGGAAAAAGATTGATGTGCAGGAGGCTGTTAAGAATCCTCCGTCTGTTAGGAAGACGCTTAGGGTTTATGTGTATAATACGTTTTCGAATCAGACAAAGGATTCTGGGAAGATTGGTGGTGTTGAAGAGCCTTCTTGGTCGCTGAGGTTAACTGGGAGGATATTGGAAGAAGATGGTAAGGATCCTGTGGTGGCAGGGGTTTCGAAAAGGGAGAGTTCTAAGTACCCAAAGTTTTCGAGTTTCTTTAACAAAATTACGGTGTATTTGGATCAAGGGTTTTACCCGGATAAGCATGTTCTTTTATGGGATAGTTCTCGTTCGTCTGTGCAACAGGATGGTTTTGAGGTGAATAGAAAAGGAGACAAAGAATTTACTGCTGTTATTAGGTTAGGAGTGAATTACTCGCCGGAGAAGTTTATGGTTTCGACACCGTTGGCTAAGGTTTTAGGGATTGAGTTTGATACTCGTCCGAGGATAATGGCTGCTCTTTGGAATTATGTGAAGTTCAGGAAGCTGCAGAGCCCGAATGACCCGTCATTCTTCATGTGTGATGCTGCTCTTCAGAAAGTGTTTGGGGAAGAAAAAATGAAATTCTCCATGGCTTCACAGAAGATATCGCAGCATTTGTCACAACCACAGCCTATACACCTGGAGCATAAAATCAAGCTTTCTGGAAATTCTCCTGCCGGAACTGCGTGTTATGACGTGCAGGTTGACGTGCCTTTTCCACTAGAGAAAGATATGTCTGCATTCTTAACAAGTATGGAGAGGCACAAAGAGATTGATGCTTTTGATGAAGTGATTTGTGCTTCTGTAAAGAAGATACATGAGCATCTTAAAAGACGGGCTTTCCTTCTTGGTTTTAGTCAGTCTCCAGGAGAGTTTATTAATGCTTTGATAGCTTCTCAGAGCAAGGATCTAAAGCTTGTTGCCGGAGATGCCAGTCATAATGCCGAAAATGAAAAGTGTTCTGAATTCTACAATCAACCATGGGTTGAGGATGCTGTAATTCGCTATCTAAACCGTAAAAGTGCCCGAACTGATGCACCTTGA 1647 0.4353 MNNNNNNPPKNPPPPAPPSFVGNHSPISVNPPQIHLLTQSHPQMQNSSQFPGHFQLSQPQNHVISQQHPQFSNPRSHPQTLQHQQHQQHQHHQQQQQPSVNQMQNNTNTNVASPATGTGSTNSSAKRSHQKSGSRPQGSPSGNQTSAFKTMELTPAPLRKKRNLPENLIPEKVAKIVPESGIYTRLLELEAQIDSALNRKKIDVQEAVKNPPSVRKTLRVYVYNTFSNQTKDSGKIGGVEEPSWSLRLTGRILEEDGKDPVVAGVSKRESSKYPKFSSFFNKITVYLDQGFYPDKHVLLWDSSRSSVQQDGFEVNRKGDKEFTAVIRLGVNYSPEKFMVSTPLAKVLGIEFDTRPRIMAALWNYVKFRKLQSPNDPSFFMCDAALQKVFGEEKMKFSMASQKISQHLSQPQPIHLEHKIKLSGNSPAGTACYDVQVDVPFPLEKDMSAFLTSMERHKEIDAFDEVICASVKKIHEHLKRRAFLLGFSQSPGEFINALIASQSKDLKLVAGDASHNAENEKCSEFYNQPWVEDAVIRYLNRKSARTDAP* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3984 548 SMART swib_2 333 412 IPR019835 -
Mal5g3984 548 MobiDBLite consensus disorder prediction 7 21 - -
Mal5g3984 548 Pfam SWIB/MDM2 domain 336 407 IPR003121 -
Mal5g3984 548 Gene3D SWIB/MDM2 domain 329 414 IPR036885 -
Mal5g3984 548 ProSiteProfiles SWIB/MDM2 domain profile. 332 409 IPR003121 -
Mal5g3984 548 CDD SWIB_like 339 407 - -
Mal5g3984 548 MobiDBLite consensus disorder prediction 23 151 - -
Mal5g3984 548 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 107 548 - -
Mal5g3984 548 SUPERFAMILY SWIB/MDM2 domain 327 417 IPR036885 -
Mal5g3984 548 MobiDBLite consensus disorder prediction 1 162 - -
Mal5g3984 548 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 107 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3984 Mal-Chr5 109542123 109544942 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mal5g3984 SWIB 6.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3984 K11650 - gmx:100817271 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3984 5 109542123 109544942 Mal2g2502 2 31696500 31698703 ECH
Mal5g3984 5 109542123 109544942 Mal5g3984 5 109542123 109544942 ECH
Mal5g3984 5 109542123 109544942 Mal2g2502 2 31696500 31698703 PCT