Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2502 ATGAATAATAATCAAGCAAAGAATTTTGGTGCATCTTCATCATCATCATTGTTTGGTCGTTTTGGAACACCACCACCACAGCCCCAACTACAGAACCCAAACCTCCTGAGCCAACAACAATGGTCTCATGTTCTCTCAAGATCACACCCTCAAACCCAATTCCATGGTCAATTTCAGTTTTCAGAACCACAATCACATTCTCAAGGTTTTTCACAAGCCCATTATGCACAATTGCAGTCTCAGGCTGCACTTGCTTCGTTACAATCATCACTAACTCAACCTGTTACTCCATTGCATAATGCCAATACCAATGCTGTATCGACTCCGGTTACCGGTAGCTCCAAGCGAGCAGGAACTCAAAGGAATTTATTGCGGACTCCAGGTTTGTCTGGTGCGAACCAGAATGTTTCGGATAAGACTATGGAATTGACTCCTGGTTCTCGGCGAAGGAAGAGAGAGTTACCGGAGAAGCAGATGATGGAGAAAGTGGCTGCAATTTTGCCTGAGTCTGCTCTTTATACTCAGTTGCTTGATATTGAGGCTCAGATGGATGCTGCATTGGCTAAGAGAAAGGTTGATATGCAGGAGGCGATTAGATCCCCTCCCCATGTTCAGAAAACTCTGAGAATTTATGTGTTTAATACGTTCTCGAAACACACAAAAACTGACTCTGAGGATAAAACTGTTGAGGAATCTTCTTGGTCTTTGAAGATAATTGGAAGGGTATTGGAAGATGGTAATGATCCTTTGTTTGGAATTTTGCAGAGATCAAGTCCTTCTGACACAAAGTTCTCTGATTTCTTCAAGAAAATTACCATTTGCTTGGATCAGAACCTTTATCCGGAAAACCACATTATTGTGTGGGACAGTGCTCATTCGCCTAAACAACAAGATGGTTTTGAGGTGAAGAGGAAAGGAGACAAAGAATTCACTGCAGTGATCAAACTAGATTTGAAATATTCACCTGAGAAGTTCATGGTCTCAGCACCGTTGTCTAGACTTTTAGGGGTTGAGGTCGAGACTCGCCCGAGAATCATAGCTGCTCTTTGGCATTATGTGAAGTCCAGGAAGCTACAATGTCCCGATGAACCTTCATTCTTCATCTGTGATCCTTACCTCCAAAGGGTTTTTGGGGAAGAGAAGATGGGATTCACCACGGCTGCTCAGAAGTTGTTAGAGCATTTGTCACAACCAAAGCCTATATATTTGGAGCATAACATCAAGCTTTCTGGAGATTGTCCATCTGGGACTGCATGTTACGATGTACAGGTTGACATGCCTATTCCACTGCAGAAAGAAATGTCTGCATTCTTGGGCAGCAATAGCACTGAGAGTAACAAAGAGATTGAAGCTTATGATGAGATGATTTCCGCTAACCTAAAGAAGATCCAAGAGCATCGTAGAAGACGTGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAGCAGAGTTTATCGATGCTACAATTGCTTCTCAGAGCAAGGATCTAAAACTTGTTGCTGGAGATGCCGGCCGTAATTCTGAAAAGGAGCAGTGTCCTGAATTTTATAAGCAACCATGGGTTGAGGATGCTGTCATTCGGTACTTGAACCGCAAAGGTGCTGGAAGAGATGCTCGTGAGGGCAACTAA 1626 0.4311 MNNNQAKNFGASSSSSLFGRFGTPPPQPQLQNPNLLSQQQWSHVLSRSHPQTQFHGQFQFSEPQSHSQGFSQAHYAQLQSQAALASLQSSLTQPVTPLHNANTNAVSTPVTGSSKRAGTQRNLLRTPGLSGANQNVSDKTMELTPGSRRRKRELPEKQMMEKVAAILPESALYTQLLDIEAQMDAALAKRKVDMQEAIRSPPHVQKTLRIYVFNTFSKHTKTDSEDKTVEESSWSLKIIGRVLEDGNDPLFGILQRSSPSDTKFSDFFKKITICLDQNLYPENHIIVWDSAHSPKQQDGFEVKRKGDKEFTAVIKLDLKYSPEKFMVSAPLSRLLGVEVETRPRIIAALWHYVKSRKLQCPDEPSFFICDPYLQRVFGEEKMGFTTAAQKLLEHLSQPKPIYLEHNIKLSGDCPSGTACYDVQVDMPIPLQKEMSAFLGSNSTESNKEIEAYDEMISANLKKIQEHRRRRAFFLSFSQSPAEFIDATIASQSKDLKLVAGDAGRNSEKEQCPEFYKQPWVEDAVIRYLNRKGAGRDAREGN* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2502 541 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 88 539 - -
Mal2g2502 541 ProSiteProfiles SWIB/MDM2 domain profile. 320 397 IPR003121 -
Mal2g2502 541 CDD SWIB_like 327 395 - -
Mal2g2502 541 Gene3D SWIB/MDM2 domain 318 402 IPR036885 -
Mal2g2502 541 MobiDBLite consensus disorder prediction 1 22 - -
Mal2g2502 541 MobiDBLite consensus disorder prediction 1 33 - -
Mal2g2502 541 Pfam SWIB/MDM2 domain 324 395 IPR003121 -
Mal2g2502 541 SUPERFAMILY SWIB/MDM2 domain 318 405 IPR036885 -
Mal2g2502 541 SMART swib_2 321 400 IPR019835 -
Mal2g2502 541 MobiDBLite consensus disorder prediction 95 142 - -
Mal2g2502 541 MobiDBLite consensus disorder prediction 95 153 - -
Mal2g2502 541 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 88 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2502 Mal-Chr2 31696500 31698703 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mal2g2502 SWIB 6.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2502 K11650 - gmx:100784907 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3984 5 109542123 109544942 Mal2g2502 2 31696500 31698703 ECH
Mal2g2502 2 31696500 31698703 Mal2g2502 2 31696500 31698703 ECH
Mal5g3984 5 109542123 109544942 Mal2g2502 2 31696500 31698703 PCT