Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1607 ATGGGTTTATTTTCTGGGATTTTCATGGGGATGCTGTTTGGCATAGCATTGATGGCAGGATGGGCTCGTATGATGAGGTATAGAAGTGCCAAGAGAATTGCAAAGGCTGTTGACATCAAAATCCTTGGATCCCTCAACAGAGAGGATTTGAAGAAAATTTGTGGGGAAAATCTTCCTGAATGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCTCCTGAGCAAACTTTGGCCATTTGTGGCAGAAGCCGCAACGATGGTGATCAAGGAATCTGTTGAACCTCTGCTGGAAGAGTACAGACCTCCTGGAATTACTTCACTGAAGTTCAGCAAACTTTCACTTGGAAATGTAGCTCCAAAAGTTGAAGGTATTCGTGTGCAGAGTCTTACCAAAGGTCAAATCATAATGGACATAGATCTCCGTTGGGGTGGTGATCCCAGTATTATTTTGGCTGTCGAAGCTGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTAAAAGTTTTCACCATTGTTCGTGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCTGTTGTTGTTGCTCTTCTTGCTGAGCCGAAGCCGAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACTGCTCTTCCTGGAATTTCAGATATGATTGATGATACTGTGAACACAATTGTTACTGATATGCTCCAATGGCCACATAGGATTGTTGTTCCACTTGGCGGTATACCTGTTGATATTAGTGAATTGGAGCTTAAACCTCATGGAAGTCTTAAAGTGACTGTAGTGAAAGCGACCGATTTAAAGAATATGGAAATGATTGGAAAATCTGATCCTTATGTTGTTTTGTATATTCGGCCTTTATTCAAGGTTAAAACCAAGGTTGTTGATAACAACTTGAATCCTGTTTGGGATCAACCATTTGAGTTGATTGCAGAAGACAAAGAGACCCAGTCACTCATTCTTGAGGTTTTTGATGAAGACATTGGGCAAGATAAGCGATTGGGAATTGTAAAATTACCACTTATTGAATTGGAAGTACAAACTGAAAAGGAGCTTGAATTGAGGCTGCTGTCATCGCTTGATACACTCAAGGTGAAAGATAAGAAGGATAGAGGAACATTGACCGTAAAGGTCCTGTATTACCAGTTTAGCAAGGAGGAGCAATTGGCTGCACTAGAAGCAGAAAAAGCTATATTAGAAGAAAGGAAGAAACTGAAAGCCGCAGGAGTCATAGGTAGCACAATGGATGCAGTAGGGTCAGGTGTTGGACTAGTCGGAAGTGGCATTGGCGCAGGAGCTGGACTTGTCGGAAGTGGAATTGGCGCTGGAGCTGGACTTGTCGGTAGTGGTTTTGGAGCTTTTGGTAGCGGACTTAGCAAGGCGGGAAAGTTCATGGGAAGGACCATAACAGGTCATAGTGGATCAAGAAGGAGCGGTTCATCTACTCCAGTTCATACTGCACAGGAAAATGGTAGTCCAAAGCCTCAATAA 1518 0.4242 MGLFSGIFMGMLFGIALMAGWARMMRYRSAKRIAKAVDIKILGSLNREDLKKICGENLPEWISFPVYEQVKWLNKLLSKLWPFVAEAATMVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKVEGIRVQSLTKGQIIMDIDLRWGGDPSIILAVEAALVASIPIQLKDLKVFTIVRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNTIVTDMLQWPHRIVVPLGGIPVDISELELKPHGSLKVTVVKATDLKNMEMIGKSDPYVVLYIRPLFKVKTKVVDNNLNPVWDQPFELIAEDKETQSLILEVFDEDIGQDKRLGIVKLPLIELEVQTEKELELRLLSSLDTLKVKDKKDRGTLTVKVLYYQFSKEEQLAALEAEKAILEERKKLKAAGVIGSTMDAVGSGVGLVGSGIGAGAGLVGSGIGAGAGLVGSGFGAFGSGLSKAGKFMGRTITGHSGSRRSGSSTPVHTAQENGSPKPQ* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1607 505 Coils Coil 391 411 - -
Mal5g1607 505 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Mal5g1607 505 Gene3D C2 domain 260 416 IPR035892 -
Mal5g1607 505 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 501 IPR045050 GO:0008289
Mal5g1607 505 SMART C2_3c 265 362 IPR000008 -
Mal5g1607 505 MobiDBLite consensus disorder prediction 480 505 - -
Mal5g1607 505 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 501 - -
Mal5g1607 505 Pfam C2 domain 264 360 IPR000008 -
Mal5g1607 505 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 392 IPR035892 -
Mal5g1607 505 CDD C2 266 359 - -
Mal5g1607 505 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Mal5g1607 505 MobiDBLite consensus disorder prediction 476 505 - -
Mal5g1607 505 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1607 Mal-Chr5 31398418 31408840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1607 266 354 Lipid Metabolism Gene Families AT4G00700 40.449 1.14e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1607 - - gmx:100777838 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1607 5 31398418 31408840 Mal5g1607 5 31398418 31408840 ECH
Mal3g2598 3 98581877 98588506 Mal5g1607 5 31398418 31408840 PCT