Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1351 ATGTCAGAAACTGACATGGCAGTTATTAATCCTGAGATGATGAAGCCTTATGTGTGGCTTCAAACTTCTGATGAGTCAATCCAACAAGTGGAACAAGAGATTGCAATGTTTTGCCCATTTATATGCCAAGAAATATTACAAAAAGGCATGGGAACTTCCAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCAATGTTGAGCTTAATTCTTGATTACTGTCGATTTCATCAAGTACTAGGCCGCTCAAATAAGGAACGGAAGGCTTATGATGAGAAATTCGTTAGGATAGACACAGAGAAGCTCTGTGAGTTGACGTCTGCTGCAGACAGCCTTCAGTTAAAGCCGTTGGTTGATCTCACCAGTCGTGCTTTAGCTCGAATAATTGAAGGAAGATCACCGGAGGAGATACGCGACATATTTCATTTGCCTGATGATCTTACAGAGGAAGAGAAATTGGAGCCCTTGAGAAACATAACTGATGATCCAAGGATAAGGCTTTTGAACCGCTTGTATGCTAAGAAGAGGAAAGAACTTAAAGAGCGTGAGAGGATAAAGAATGTTGAGGCTGAAGAAGAGCATGTAGATGAACGTTCGGTTGATGACCTTTTGTCTTTTATTAATGGAAATGATGGAGATCCGAAGGGGATTAAAACTTCCAAGAGTAAAAAGAAGAACCGAAGGAAGAAAGACCAACAGAAGAATTCTTCTTTGAAGGGACCATCTGTACCACATAAGAAGGAAGAGGTAATTGGTCACAGTAACAGACATCAAGGTTTGGACGCTGATAGACCGTGTGAGACGTCAAGTTTACACCATACAGATGATGATCCTATGGTTGAGTTCGATGATGACGACGACGATATAGATGATGATATAGATGATCCGGTATTAAAAGCAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAGAGAATAAAAGACTTTTTGTCATCCTCACAAGAAAGGAAGACAATGCTTTTAACTACCAATGGCAACGGTTTTCTAGGGCGACATGCTTGTATGCTTCTGTGTTTCAGTATTTTACGTTTCTAG 1086 0.4052 MSETDMAVINPEMMKPYVWLQTSDESIQQVEQEIAMFCPFICQEILQKGMGTSKNCAICLPQQVSPAMLSLILDYCRFHQVLGRSNKERKAYDEKFVRIDTEKLCELTSAADSLQLKPLVDLTSRALARIIEGRSPEEIRDIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAKKRKELKERERIKNVEAEEEHVDERSVDDLLSFINGNDGDPKGIKTSKSKKKNRRKKDQQKNSSLKGPSVPHKKEEVIGHSNRHQGLDADRPCETSSLHHTDDDPMVEFDDDDDDIDDDIDDPVLKAKIDREVEDFARRLNSDWPERIKDFLSSSQERKTMLLTTNGNGFLGRHACMLLCFSILRF* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1351 361 MobiDBLite consensus disorder prediction 243 280 - -
Mal5g1351 361 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Mal5g1351 361 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Mal5g1351 361 PANTHER SKP1-LIKE PROTEIN 20 1 265 - -
Mal5g1351 361 SMART skp1_3 15 116 IPR001232 GO:0006511
Mal5g1351 361 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Mal5g1351 361 SUPERFAMILY POZ domain 16 80 IPR011333 -
Mal5g1351 361 SUPERFAMILY Skp1 dimerisation domain-like 91 159 IPR036296 GO:0006511
Mal5g1351 361 Coils Coil 175 195 - -
Mal5g1351 361 MobiDBLite consensus disorder prediction 207 290 - -
Mal5g1351 361 PANTHER SKP1 1 265 IPR016897 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1351 Mal-Chr5 24111759 24115749 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1351 - - gmx:100794666 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1351 5 24111759 24115749 Mal5g1351 5 24111759 24115749 ECH
Mal5g1351 5 24111759 24115749 Mal3g2709 3 100435835 100439914 ECH
Mal3g2709 3 100435835 100439914 Mal5g1351 5 24111759 24115749 PCT