Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1279 ATGGGTTTGGGGAGTGAGAGTTTTCAACTTCTATCCAAGATTGCAACCAATGACCAACATGGTGAAAATTCTCCATATTTTGATGGGTGGAAAGCATATGAGAAAAACCCATTTCACCCTATTAAAAATCCTCAAGGTGTAATCCAAATGGGTCTTGCTGAAAATCAGCTCTCCTTTGATCTGATTGAAGAATGGATAAAGAATAATCCCAAGGCTTCAATTTGCACTCCTGAAGGAGTGCATAAGTTCAAAGATATTGCTAACTTTCAAGACTATCATGGGTTGCCAGAGTTTACAAGTGCTATGGCAAAATTTATGTCAAAAGTGAGAGGTGGTAGGGTGAGATTTGATCCAAACCGTATATTGATGAGTGGAGGGGCAACAGGGGCAAATGAATTAATCATGTTTTGTTTGGCTGATCCAGGAGATGCTTTTCTAGTTCCTACCCCTTACTATCCAGGATTCGTCCGTGATTTGTGCTGGAGAACTAAGGTTCAATTAATTCCTATCCATTGTGATAGCTCCAACAACTTCAAGATAACAAGAGAAGCACTTGAAGTAGCATACAACAAAGCACAAGAAAACAACATCAATGTAAAAGGCTTGATCATAACAAACCCTTCCAACCCATTAGGCACAACCTTAGACAAAGAGACATTAAAGAGTCTTGTAAGCTTCATCAATGAGAAAACAATCCATTTAGTTTGTGATGAAATCTATGCAGCCACGGTTTTCACGTCGCCAAACTATGTAAGTGTTAGTGAAGTCATAGAAGAAATGAAGTGCAACCTTGATCTCATTCACATCATTTATAGTTTATCAAAAGATTTAGGGTTTCCTGGTTTTAGGGTTGGGATAGTTTATTCATACAATGATCAAGTGGTGAATTGTGGAAGGAAAATGTCAAGCTTTGGATTAGTCTCATCTCAAACTCAACACATGCTTGCTTCAATGCTTTCTGATGAAAAATTTGTTGACAAGTTTCTTTTGGAGAGTTCGCGAAGGTTGTTAAAAAGGCATGAAAAATTTACGAAGGGACTTGAAGAAGTTGAAATTAGTCGATTTCCAAGTAATGCGGGACTTTTTTGTTGGATGAACTTGAAAAGGTTGCTTAAGGAGGAAACAATTGAAGAAGAGTTGAAGCTTTGGCGTGTGATTATTAACGAGGTGAAGCTTAATGTGTCACCGGGGTCTTCTTTTAATTGCTCCGAGGTTGGTTGGTTTAGGGTTTGTTTTGCTAATATTGATGATGAAACGGTGGAAGTTGCATTGAAAAGAATAAGAGCATTTATAGGGAAAGAAACAAATAAGAAAGTTGAAGTCAAACGTTGGCAACCAAATTTAAGGCTTAGCTTCACTTCAAGGAGATTTGACGAGAATGCTTTATCACCTCACAATCACATAATCATATCTCCTCATTCACCACTTGTTCGAGCCACATGA 1443 0.3798 MGLGSESFQLLSKIATNDQHGENSPYFDGWKAYEKNPFHPIKNPQGVIQMGLAENQLSFDLIEEWIKNNPKASICTPEGVHKFKDIANFQDYHGLPEFTSAMAKFMSKVRGGRVRFDPNRILMSGGATGANELIMFCLADPGDAFLVPTPYYPGFVRDLCWRTKVQLIPIHCDSSNNFKITREALEVAYNKAQENNINVKGLIITNPSNPLGTTLDKETLKSLVSFINEKTIHLVCDEIYAATVFTSPNYVSVSEVIEEMKCNLDLIHIIYSLSKDLGFPGFRVGIVYSYNDQVVNCGRKMSSFGLVSSQTQHMLASMLSDEKFVDKFLLESSRRLLKRHEKFTKGLEEVEISRFPSNAGLFCWMNLKRLLKEETIEEELKLWRVIINEVKLNVSPGSSFNCSEVGWFRVCFANIDDETVEVALKRIRAFIGKETNKKVEVKRWQPNLRLSFTSRRFDENALSPHNHIIISPHSPLVRAT* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1279 480 Pfam Aminotransferase class I and II 48 427 IPR004839 GO:0009058|GO:0030170
Mal5g1279 480 CDD AAT_like 88 429 - -
Mal5g1279 480 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 6 448 - -
Mal5g1279 480 Gene3D - 70 321 IPR015421 GO:0003824
Mal5g1279 480 SUPERFAMILY PLP-dependent transferases 16 432 IPR015424 -
Mal5g1279 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Mal5g1279 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 298 321 - -
Mal5g1279 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Mal5g1279 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Mal5g1279 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 266 290 - -
Mal5g1279 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Mal5g1279 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Mal5g1279 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Mal5g1279 480 Gene3D Aspartate Aminotransferase, domain 1 36 426 IPR015422 GO:0003824
Mal5g1279 480 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 272 285 IPR004838 GO:0003824|GO:0009058|GO:0030170
Mal5g1279 480 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1279 Mal-Chr5 22389272 22392807 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1279 K20772 - gmx:100813347 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1279 5 22389272 22392807 Mal5g1279 5 22389272 22392807 ECH
Mal3g2773 3 101445542 101448988 Mal5g1279 5 22389272 22392807 PCT