Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1082 ATGGTCCAAGGTGAGAAGAAACAAGAGAATGGACATTATGATATGGAAGAGAAAATAGATTATGTGTTTAAGGTGGTTGTAATTGGTGACTCAGCAGTAGGCAAGACTCAAATGCTATCAAGATTTTCAAAAAATGAGTTTTGCTTTGACTCAAAGTCAACCATTGGAGTTGAATTTCAAACTAGGACTGTTACTATTAATGGTAAAGTAATTAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCTGTAACAAGTGCATACTACAGAGGTGCATTAGGGGCCATGCTAGTGTATGACATAACTAAAAGACAATCATTTGATCATGTTGCTAAATGGGTTGAAGAACTTAGAGCACATGCAGATACCTCAATTGTGATTATGCTAGTTGGTAACAAAGGTGACCTTGTTGATTTGAGAATGGTTCCTACTGAAGATGCAGTTGAGTTTGCAGAAGATCAAGGTTTATTCTTCTCAGAGACTTCAGCTCTCACTGGTGAGAATGTGGAGGGTGCATTTATCAAATTGCTAGAAGAGATTAATAGTGTAGTTTCTAAAAAGGCATTGGAATGTGGTAATGGAAAGGGGAGTAATGGTTACTGTGATGCTGCAACACTTAAAGGTTCAAAGATTGATGTAATTTCAGGTGCTGAATTGGAAATTAGTGAGATGAAGAAGTTGTCTTCATGCTCTTGTTAA 708 0.3771 MVQGEKKQENGHYDMEEKIDYVFKVVVIGDSAVGKTQMLSRFSKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVAKWVEELRAHADTSIVIMLVGNKGDLVDLRMVPTEDAVEFAEDQGLFFSETSALTGENVEGAFIKLLEEINSVVSKKALECGNGKGSNGYCDAATLKGSKIDVISGAELEISEMKKLSSCSC* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1082 235 ProSiteProfiles small GTPase Ras family profile. 17 235 IPR001806 GO:0003924|GO:0005525
Mal5g1082 235 SMART rab_sub_5 23 186 - -
Mal5g1082 235 SMART rho_sub_3 25 189 IPR001806 GO:0003924|GO:0005525
Mal5g1082 235 Gene3D - 15 204 IPR027417 -
Mal5g1082 235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 187 IPR027417 -
Mal5g1082 235 SMART ran_sub_2 28 230 - -
Mal5g1082 235 CDD Rab11_like 20 183 - -
Mal5g1082 235 SMART ras_sub_4 20 186 - -
Mal5g1082 235 Pfam Ras family 24 184 IPR001806 GO:0003924|GO:0005525
Mal5g1082 235 ProSiteProfiles small GTPase Rab1 family profile. 18 233 - -
Mal5g1082 235 PRINTS Transforming protein P21 ras signature 46 62 - -
Mal5g1082 235 PRINTS Transforming protein P21 ras signature 23 44 - -
Mal5g1082 235 PRINTS Transforming protein P21 ras signature 126 139 - -
Mal5g1082 235 PRINTS Transforming protein P21 ras signature 161 183 - -
Mal5g1082 235 PRINTS Transforming protein P21 ras signature 64 86 - -
Mal5g1082 235 ProSiteProfiles small GTPase Rho family profile. 16 195 - -
Mal5g1082 235 TIGRFAM small_GTP: small GTP-binding protein domain 22 176 IPR005225 GO:0005525
Mal5g1082 235 PANTHER RAS-RELATED PROTEIN RABA3 6 235 - -
Mal5g1082 235 PANTHER - 6 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1082 Mal-Chr5 19182250 19183944 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1082 K07904 - gmx:100799439 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1082 5 19182250 19183944 Mal5g1082 5 19182250 19183944 ECH
Mal3g4064 3 119274532 119276254 Mal5g1082 5 19182250 19183944 PCT