Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4064 ATGAATCAGGAAATGAGTGGGGTGGAAGCTGAAATTAGGCCACAAGAGAAAATAGATTATGTATTTAAGATTGTTGTGATTGGTGACTCAGCTGTAGGAAAGACTCAAATACTGTCAAGGTTTGCAAAGAATGAGTTCTGTTTTGACTCAAAATCCACCATTGGAGTTGAATTTCAGACTAGAACTGTCACAATTAATGGTAAACTCATCAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGAGCGGTTACAAGTGCATACTACAGAGGAGCATTAGGGGCCATGCTGGTGTACGACATAACCAAAAGACAAACGTTCGATCATGTAGCTAGATGGGTTGAGGAACTGCGATCACACGCCGACAACTCCATCGTGATCATGCTAATTGGTAACAAAGGTGATCTTGTGGACCAAAGAGTGGTACACACGGAAGATGCTGTGGAGTTTGCAGAGGATCAGGGCCTCTTTTTCTCTGAGACTTCAGCTTTCAGTGGTGAAAATGTTAACTCTGCATTTTTCAAATTGCTTGAAGAGATCAATAAGGTTGTCTCAAAAAGGTCGTTGGAATGTAATAATGGTAACCATAATGTTGCCACACTTAAAGGATCGAAAATAGATTTAATTTCAGGTCCTGAATTAGAAATTAGTGAAATGAAGAAAGTTCCTTCATGTTCTTGTTGA 690 0.4014 MNQEMSGVEAEIRPQEKIDYVFKIVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINGKLIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDHVARWVEELRSHADNSIVIMLIGNKGDLVDQRVVHTEDAVEFAEDQGLFFSETSAFSGENVNSAFFKLLEEINKVVSKRSLECNNGNHNVATLKGSKIDLISGPELEISEMKKVPSCSC* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4064 229 SMART ran_sub_2 27 224 - -
Mal3g4064 229 PANTHER - 1 229 - -
Mal3g4064 229 PRINTS Transforming protein P21 ras signature 160 182 - -
Mal3g4064 229 PRINTS Transforming protein P21 ras signature 22 43 - -
Mal3g4064 229 PRINTS Transforming protein P21 ras signature 125 138 - -
Mal3g4064 229 PRINTS Transforming protein P21 ras signature 45 61 - -
Mal3g4064 229 PRINTS Transforming protein P21 ras signature 63 85 - -
Mal3g4064 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 196 IPR027417 -
Mal3g4064 229 SMART rho_sub_3 24 188 IPR001806 GO:0003924|GO:0005525
Mal3g4064 229 SMART ras_sub_4 19 185 - -
Mal3g4064 229 ProSiteProfiles small GTPase Rab1 family profile. 17 219 - -
Mal3g4064 229 CDD Rab11_like 19 182 - -
Mal3g4064 229 ProSiteProfiles small GTPase Ras family profile. 16 229 IPR001806 GO:0003924|GO:0005525
Mal3g4064 229 SMART arf_sub_2 1 186 - -
Mal3g4064 229 TIGRFAM small_GTP: small GTP-binding protein domain 21 175 IPR005225 GO:0005525
Mal3g4064 229 SMART rab_sub_5 22 185 - -
Mal3g4064 229 PANTHER RAS-RELATED PROTEIN RABA3 1 229 - -
Mal3g4064 229 Pfam Ras family 23 183 IPR001806 GO:0003924|GO:0005525
Mal3g4064 229 ProSiteProfiles small GTPase Rho family profile. 15 186 - -
Mal3g4064 229 Gene3D - 15 222 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4064 Mal-Chr3 119274532 119276254 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4064 K07904 - gmx:100787725 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4064 3 119274532 119276254 Mal3g4064 3 119274532 119276254 ECH
Mal3g4064 3 119274532 119276254 Mal5g1082 5 19182250 19183944 PCT