Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0547 ATGAACGGTGGCGATGAGGTTGTTGTAGCTACGGGGGAACCAGTGCAACCGTTGGATTGGAAATTCTCGCAGGTTTTTGGTGAACGTGCGGCTGGAGAGGAAGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGCGATCATCTTGCTACTGGCGATCGCGGTGGTCGAGTAGTTCTCTTTGAGCGAACAGATGCAAAAGATTATGGATCAAGAAGGGATTTGGAGAGGACAGACAGTTCTATTAGTAGGCATCCTGAGTTCCGCTATAAAACAGAGTTTCAGAGTCACGAGCCTGAGTTTGACTATCTTAAGAGTTTGGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGCCAAACAGCTAACGGGGCTGTATTCCTTCTATCTACAAACGACAAAACAATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTGAAGAAAATTTCTGACATGAATATTGACCCTGCAAAAGCAAATGGAAATGGATCTATTGCTAGTTCAAGTAATTCTGGTATCCCTAAGCCACATCTTGCAAATGGAGGATCTTCAGATAAAACATATAGCTATCTAAGCAATGATTTCTCATTTCCACCAGGAGGCTTACCTTCACTAAGATTACCCTCGGTAGCTAGCCATGAGACCAGTCTGTTGGCTCGATGTCGTAGAGTATATGCACATGCTCATGACTATCACATCAATTCTATTTCAAATAACAGCGATGGAGAAACTTTCATATCTGCTGATGATTTACGAATAAATCTTTGGAACCTTGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTTACTGAGGTTATAACATCAGCAGAGTTTCACCCTACACATTGTAATACATTGGCCTATAGTAGTTCAAAGGGTTCAATACGTCTTGTTGACTTGCGGCAGTCAGCCTTATGTGATTCTCATTCCAAATTATTTGAGGAACAGGAGGCCCCTGGTTCCAGATCATTTTTCACAGAAATTATTGCTTCCATCTCAGATATAAAATTTGCAAGGGATGGAAGATATATACTTAGTCGCGATTACATGACTCTGAAGTTATGGGACATTAATATGGATTCTGGCCCAGTTGCAACGTACCGTGTTCATGAGTATTTAAGGCCAAGGTTGTGCGATTTATACGAAAATGATTCAATTTTTGATAAGTTTGAGTGTTGTCTGAGTGGTGATGGATCTCGTGTTTCAACTGGTTCTTACAGCAATCTATTCCGCGTGTTTGGTTGTGCGTCCGGAAGTACAGAGGCTACAACTTTGGAAGCTAGTAAAAATCCAATGAGAAGACAAGTTCCAACACCTTCAAGGCCTTCTAGATCACTTGGAAACAGTATCACAAGAGTTGTAAGACGAGGAGCCGAGAACACCGGTGTCGACGCAAATGGAAATTCTTTTGATTTCACAACAAAGTTACTACACTTAGCATGGCACCCAAGTGAAAACTCTATAGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATGCATGA 1545 0.4045 MNGGDEVVVATGEPVQPLDWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAKDYGSRRDLERTDSSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMNIDPAKANGNGSIASSSNSGIPKPHLANGGSSDKTYSYLSNDFSFPPGGLPSLRLPSVASHETSLLARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFARDGRYILSRDYMTLKLWDINMDSGPVATYRVHEYLRPRLCDLYENDSIFDKFECCLSGDGSRVSTGSYSNLFRVFGCASGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAENTGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0547 514 SMART WD40_4 222 261 IPR001680 GO:0005515
Mal5g0547 514 SMART WD40_4 331 369 IPR001680 GO:0005515
Mal5g0547 514 SMART WD40_4 272 312 IPR001680 GO:0005515
Mal5g0547 514 SMART WD40_4 31 66 IPR001680 GO:0005515
Mal5g0547 514 SMART WD40_4 104 144 IPR001680 GO:0005515
Mal5g0547 514 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 514 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 MobiDBLite consensus disorder prediction 161 183 - -
Mal5g0547 514 MobiDBLite consensus disorder prediction 164 183 - -
Mal5g0547 514 PIRSF PPA2_B55 10 514 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Mal5g0547 514 Gene3D - 16 196 IPR015943 GO:0005515
Mal5g0547 514 Gene3D - 323 510 IPR015943 GO:0005515
Mal5g0547 514 MobiDBLite consensus disorder prediction 442 461 - -
Mal5g0547 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 231 245 IPR018067 -
Mal5g0547 514 SUPERFAMILY WD40 repeat-like 39 506 IPR036322 GO:0005515
Mal5g0547 514 Gene3D - 209 322 IPR015943 GO:0005515
Mal5g0547 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 261 288 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 400 426 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 233 260 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 346 373 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 374 399 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 120 148 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 483 512 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 318 345 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 289 317 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 91 119 IPR000009 GO:0000159|GO:0019888
Mal5g0547 514 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 514 - -
Mal5g0547 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 104 118 IPR018067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0547 Mal-Chr5 8473761 8481493 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0547 K04354 - gmx:100786941 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0547 5 8473761 8481493 Mal4g0369 4 2776329 2784543 ECH
Mal5g0547 5 8473761 8481493 Mal5g0547 5 8473761 8481493 ECH
Mal4g0369 4 2776329 2784543 Mal5g0547 5 8473761 8481493 PCT