Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0473 ATGCTTTCGTTTTCTGTCTCTCGTTTCCCTTCAACACAATCATTGTCTCTCCATAAAACATCAACAACAACCACAAATGCAACTTTTCACACCAACCCACCACACCAAAACGCTTCATCTTCCAGCAACAACAACAAAACCGAAAACTTTCTCAAACAAAACGCCACTAGCAGACCAAAACCAATTGAGGAAAATAAAAATGAGGTTGTATTCGATAGAAAGAAGAAAAAGGGTAAGGAAAAAGTTTACTGGGTTTGTAGCAATTGTGGGTATAGTACTGGACAATGGTGGGGTGTGTGTAGATCATGTAGTGTTTCTGGGACTATGAAAGAGTTTCATGAAGTGAAAAGTAGTGATAAGGTTAGTGGGTTTTCTGTTTTGGAAGATGGGTTGAGGTCTTGGCTTCCGGAGAAGAGTGGTGAGTTGCGTCCTTTGAGATTGTCTGAGGTTAATAGAGGAGTTGATCATCTGCATTGGAGAATTCCTTTGTCTGGTCCTTTTGGAAATGAAGTTTCCAGAGTGCTTGGTGGTGGCCTTGTACCAGGCTCATTGACTTTAGTTGGCGGGGATCCTGGTGTTGGGAAGAGTACTCTGTTGTTGCAGATTGCTGCACAAATTGCCGAAGGGCACAAAGACAGTGAAGCATCTTCAGTTGTTTATGTCTCTGGTGAAGAGAGCGTTGAGCAAATTGGTAACCGAGCAGACCGCCTAACAATTGGATCAGATATTTATCTATATTCAAGTAATGATATTGAGGACATATTGAAGAAAGTTCAGTATCTCTCCCCCCAGGCTCTAGTTGTTGATTCTGTACAAACGGTTTATTTGAAGGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTTAAGGAATGTACTTCGGCTTTACTGCGATTTGCGAAGACAACAAACATCCCTGTTTTACTGATTGGACATGTGACAAAATCTGGAGACATAGCAGGACCTCGTGTCTTGGAGCATATCGTTGATGTTGTTTTGTATATGGAAGGCGAGAAGTACACTTCCCATCGTATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTCAGGCTGTTTCAAATGCCAGTGAAATGTTTCTTAGTGAGCAAGACCTAGATTCAGATATTTTAGCTGGTCTAGCTGTAGCTGTAATAATGGATGGATCCCGAACATTTCTTATCGAAATTCAGGCACTTTGTCTCTCTGGTTCGACAGGATCAAGGCAGTTTAATGGTATCCAAGCAAATAGAGCTGATATGATCATATCTGTTCTTATCAAGCAAGCAGGACTTCGTCTCCAAGAACATGCTGTGTTTTTAAATGTTGTTAGTGGGTTGTCAATGACCGAGACCGCAGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTGCTTGGAGCTGCCTATTCCAAATGACATTGCATTCATCGGTGAAATAGGTCTTGGTGGTGAGCTTCGCATGGTTACTAGAATGGAAAAAAGGGTACACACAGTGGCGAAATTGGGTTATAGAATGTGTATAGTACCTAAGGCAGCTGAAAAAGTTTTGGGAACTGAAGGTTTAGGAAACATCAAAGTTGTTGGTTGCAGGAATCTGAAAGACGTTATCAACACTATATTTCCGAATGTGAATAGAAGAAGCAAGTGA 1689 0.4168 MLSFSVSRFPSTQSLSLHKTSTTTTNATFHTNPPHQNASSSSNNNKTENFLKQNATSRPKPIEENKNEVVFDRKKKKGKEKVYWVCSNCGYSTGQWWGVCRSCSVSGTMKEFHEVKSSDKVSGFSVLEDGLRSWLPEKSGELRPLRLSEVNRGVDHLHWRIPLSGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIAAQIAEGHKDSEASSVVYVSGEESVEQIGNRADRLTIGSDIYLYSSNDIEDILKKVQYLSPQALVVDSVQTVYLKGIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYTSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQDLDSDILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQFNGIQANRADMIISVLIKQAGLRLQEHAVFLNVVSGLSMTETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGGELRMVTRMEKRVHTVAKLGYRMCIVPKAAEKVLGTEGLGNIKVVGCRNLKDVINTIFPNVNRRSK* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0473 562 PRINTS DNA repair protein radA signature 86 110 - -
Mal5g0473 562 PRINTS DNA repair protein radA signature 343 369 - -
Mal5g0473 562 PRINTS DNA repair protein radA signature 173 201 - -
Mal5g0473 562 PRINTS DNA repair protein radA signature 308 336 - -
Mal5g0473 562 PRINTS DNA repair protein radA signature 269 293 - -
Mal5g0473 562 PRINTS DNA repair protein radA signature 418 441 - -
Mal5g0473 562 Gene3D - 389 562 IPR014721 -
Mal5g0473 562 Pfam AAA domain 174 317 - -
Mal5g0473 562 ProSiteProfiles RecA family profile 1. 160 313 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Mal5g0473 562 PANTHER DNA REPAIR-LIKE PROTEINRADA 19 555 - -
Mal5g0473 562 SMART AAA_5 181 339 IPR003593 -
Mal5g0473 562 Pfam Rubredoxin metal binding domain 84 111 IPR041166 -
Mal5g0473 562 TIGRFAM sms: DNA repair protein RadA 79 549 IPR004504 GO:0003684|GO:0005524|GO:0006281
Mal5g0473 562 PANTHER DNA REPAIR PROTEIN RADA 19 555 - -
Mal5g0473 562 Pfam Subunit ChlI of Mg-chelatase 435 525 - -
Mal5g0473 562 Gene3D - 170 370 IPR027417 -
Mal5g0473 562 SUPERFAMILY Ribosomal protein S5 domain 2-like 350 554 IPR020568 -
Mal5g0473 562 MobiDBLite consensus disorder prediction 15 47 - -
Mal5g0473 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 364 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0473 Mal-Chr5 7025092 7032584 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0473 K04485 - gmx:100794165 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0473 5 7025092 7032584 Mal5g0473 5 7025092 7032584 ECH
Mal4g0345 4 2529604 2538073 Mal5g0473 5 7025092 7032584 PCT