Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0345 ATGAAACTCCTCAGAACAATCTTCATCCACCATATCCACAAGCGCCACCATTTCCTCAACTCCAAACGTGTCTTTTCATCCTCAGTTTCAAACCCTTCTTTTTCTTCAACACCGGAAGACACCGAAACCCTACATTCCAATGGAAAAACCCAACAACCCACCAATACTTGGAGTATGCACGGTAACGTAGTTGCAAAACAGAAAATCACCGATAACAGTGATGAGGAGGTTGAGGAAGAAAAACCAAGCGAAAATGAAAATGGGAGCGTGATGAATTTGAAGAACAGAACTATAATTAGAACCTTGGCGACGCCGGAAAAAAGAAGTACTAAGAAGGTGAAGACTCAGTGGGTTTGTTCTAATTGTGGGAATACTGCAGGACAATGGTGGGGGACTTGTTCTTCTTGTAGCATGGTTGGAACAATGAAAGAGTTTCATGAAGCGAAACTTGGTGATGGTGTTGATAATAAGGTTAGAACTGGTTTATCTGTTTCTGAAGATGCAATGGGTGCTTGGCTTCCACGGAGAGGTGATCAGTTGCGTCCTGTTCATTTGAGTGAGGTTAACCGTGGATTCAACGAGAAGGGTTGGCGATTTCCTTTGTCAGGCCCTTTTGGAGATGAAGTTTCTATTGTGCTTGGCGGTGGTCTTGTACCAGGCTCTTTGAATTTAGTTAGTGGTGATCCTGGTGTTGGGAAGAGTACACTGTTGTTGCAGATGGCAGCATTGATAGCAGACGGATGCAATGGCGGTGACGATGAGGCCCTTCCAGTTGTATATGTCTCTGGTGAAGAGAGCCTTCAGCAAATTGGTCACAGAGCAGGCCGCCTTGGGATTAAATCTGATATTTATTTGTATTCAAGTACTGATATTGAGGACATAATAAGGATAGCTCAGTCTCTCCCCATTAGAGCCCTGGTTGTTGATTCAATACAAACTGTTTATTTGAAAGGAATTGCAGGAAGTGCTGGAGGGATTGTGCAGGTGAAAGAATGTACTTCAGCTTTGATGCGATTTGCTAAAACGACTAACATCCCCGTACTTTTGATTGGACATGTGACAAAATCTGGAGACATAGCTGGGCCTCGTGTTCTGGAGCATATTGTTGATGTCGTCTTGTACTTGGAAGGTGAGAGGTTCACTTCATATCGAATGCTTCGTGCTGTGAAAAATCGGTTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCAGAATCAGGATTTAAGGCTGTTTCCAATGCAACTGAAATGTTTCTCACTGAGCAAGACCCTGACTCAGATGTTTTAGTTGGGTTAGCTTTTACCGTAATAATGGATGGCTCAAGAACTTTCATAATTGAAGTTCAGGCACTCTGCCTTCCACAATCCTCGGTAGAAGGATCAACTTCAAGAGTAGCTAATGGAATTGACACACATAGAGCTAACATGATCAAATGTGTTCTTATAAAGCAAGCAGGTCTTCAAATCCCAGTAAATTCTGTGCATTTGAATGTTGTTAGTGGATTGAAAATGACTGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGCTTCTTGGAGTACCCTATTCCAAAAGGCATTGCATTCATTGGTGAAATTGGCCTTAGCGGAGAGCTTCGCATGGTTCCTAGAATCGAGAAAAGAGTGCACGCATTGGCAAAGTTAGGTTACAAAACCTGTGTAGTACCGAAGCAAGCTGTAAAAGCTTTAGGAACTGAAGGTCTAGAAAATATTGAAGTAGTAGGTTGCAAGAATCTGAAGGAGTTTATTAACGCAGTATTCAGAAGTTTGGAAGAGGCTGAATGA 1818 0.4263 MKLLRTIFIHHIHKRHHFLNSKRVFSSSVSNPSFSSTPEDTETLHSNGKTQQPTNTWSMHGNVVAKQKITDNSDEEVEEEKPSENENGSVMNLKNRTIIRTLATPEKRSTKKVKTQWVCSNCGNTAGQWWGTCSSCSMVGTMKEFHEAKLGDGVDNKVRTGLSVSEDAMGAWLPRRGDQLRPVHLSEVNRGFNEKGWRFPLSGPFGDEVSIVLGGGLVPGSLNLVSGDPGVGKSTLLLQMAALIADGCNGGDDEALPVVYVSGEESLQQIGHRAGRLGIKSDIYLYSSTDIEDIIRIAQSLPIRALVVDSIQTVYLKGIAGSAGGIVQVKECTSALMRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYLEGERFTSYRMLRAVKNRFGSTDELGVFEMSESGFKAVSNATEMFLTEQDPDSDVLVGLAFTVIMDGSRTFIIEVQALCLPQSSVEGSTSRVANGIDTHRANMIKCVLIKQAGLQIPVNSVHLNVVSGLKMTETAGDLAIAAAICSSFLEYPIPKGIAFIGEIGLSGELRMVPRIEKRVHALAKLGYKTCVVPKQAVKALGTEGLENIEVVGCKNLKEFINAVFRSLEEAE* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0345 605 Gene3D - 419 605 IPR014721 -
Mal4g0345 605 PRINTS DNA repair protein radA signature 462 485 - -
Mal4g0345 605 PRINTS DNA repair protein radA signature 309 333 - -
Mal4g0345 605 PRINTS DNA repair protein radA signature 348 376 - -
Mal4g0345 605 PRINTS DNA repair protein radA signature 383 409 - -
Mal4g0345 605 PRINTS DNA repair protein radA signature 211 239 - -
Mal4g0345 605 PRINTS DNA repair protein radA signature 119 143 - -
Mal4g0345 605 PANTHER DNA REPAIR-LIKE PROTEINRADA 1 598 - -
Mal4g0345 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 404 IPR027417 -
Mal4g0345 605 Pfam Rubredoxin metal binding domain 117 144 IPR041166 -
Mal4g0345 605 MobiDBLite consensus disorder prediction 27 90 - -
Mal4g0345 605 Gene3D - 209 410 IPR027417 -
Mal4g0345 605 Pfam AAA domain 214 357 - -
Mal4g0345 605 Pfam Subunit ChlI of Mg-chelatase 454 569 - -
Mal4g0345 605 PANTHER DNA REPAIR PROTEIN RADA 1 598 - -
Mal4g0345 605 ProSiteProfiles RecA family profile 1. 198 353 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Mal4g0345 605 SMART AAA_5 219 379 IPR003593 -
Mal4g0345 605 TIGRFAM sms: DNA repair protein RadA 112 590 IPR004504 GO:0003684|GO:0005524|GO:0006281
Mal4g0345 605 MobiDBLite consensus disorder prediction 27 68 - -
Mal4g0345 605 SUPERFAMILY Ribosomal protein S5 domain 2-like 390 598 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0345 Mal-Chr4 2529604 2538073 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0345 K04485 - gmx:100791181 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0345 4 2529604 2538073 Mal4g0345 4 2529604 2538073 ECH
Mal4g0345 4 2529604 2538073 Mal5g0473 5 7025092 7032584 PCT