Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0232 ATGACACAACTAAGGCAAAAAAATCTCATTTTTATACTTATGTATATTGTAGCACTCTTTCTCCTCACATTTAAACTAGCTTTTGGTATTGAGGAAACTTTAAATGTAGTGAATTTTGGAGCCAATCCCAATGGTGAAACTGATTCCACAAATGCAATCCTTACTGCATGGGCTAAAGCATGCACCTCAATAACACCAACTACTATTTATGTGCCAATAGGAAGGTTCTTAGTTGGGGGTAGTGTAGTGTTTAAGGGGGGGTGCAATAACAAGGGCATCACGGTACGTATTGATGGTACACTAGTTGCAAATTCCAATTATGATGTTATTGGAAATGAAGGGAGTTGGTTGCTTTTTGATGATGTTGATGGAGTTTCAATTGTTGGTGGTTTCCTTGATGGTCAAGGCACAAGTTTGTGGGATTGTAAGAGATCTAGCAAGAGTTGCCCAAACGGTGCAACGAACTTAAGATTTACAAATTCCAACAACATTGTTATCAATGGAGTAACCTCCTTGAATAGCCAAATGTTCCACATAGTCATAGACAGATGCAATAATGTTAGAGTACAAGGGGTCAAGGTAATAGCTGCAGGAAACAGTCCAAACACTGATGGTATTCATGTTCAACTCTCATCAAGTGTCACCATCTTCAACTCTAACATAGCAACCGGTGATGATTGCATCTCAATTGGCCCTGGAACAACAAATTTATGGATAGAAAACATAGCATGTGGACCAGGTCATGGAATTAGTGTTGGAAGTTTGGCGAAGGAATTTCAAGAGCTTGGTGTTGAAAATGTGACGGTTAAAACAATGAAATTTATCGGAACAGAAAATGGTGTACGAATTAAGTCTTGGGGGAGACCTAGCAATGGATTCGCAAGAAACATCCTTTTCCAACATGCTACCATGGTTAATGTACAAAATCCTATCGTGATTGACCAAAATTATTGCCCTAATCATAAGAATTGTCCCGGTCAGGCTTCTGGGGTTAAAATTAGCAATATTGTTTACCGAGATATTCATGGAACTTCAGCAACAGAGGTTGCAGTTAAATTGAATTGTAGTCCAACAAATCCATGCACTGGAATAAGCTTGGAAAATGTGATGCTTACATATGAAAACAAAAATGCTGAAGCTTTATGCAATCATGCTGGTGGAATTACATCTGGTTTAGTTCAACCCAACAATTGTTTCTAA 1200 0.3833 MTQLRQKNLIFILMYIVALFLLTFKLAFGIEETLNVVNFGANPNGETDSTNAILTAWAKACTSITPTTIYVPIGRFLVGGSVVFKGGCNNKGITVRIDGTLVANSNYDVIGNEGSWLLFDDVDGVSIVGGFLDGQGTSLWDCKRSSKSCPNGATNLRFTNSNNIVINGVTSLNSQMFHIVIDRCNNVRVQGVKVIAAGNSPNTDGIHVQLSSSVTIFNSNIATGDDCISIGPGTTNLWIENIACGPGHGISVGSLAKEFQELGVENVTVKTMKFIGTENGVRIKSWGRPSNGFARNILFQHATMVNVQNPIVIDQNYCPNHKNCPGQASGVKISNIVYRDIHGTSATEVAVKLNCSPTNPCTGISLENVMLTYENKNAEALCNHAGGITSGLVQPNNCF* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0232 399 Pfam Glycosyl hydrolases family 28 61 378 IPR000743 GO:0004650|GO:0005975
Mal5g0232 399 PANTHER - 12 398 - -
Mal5g0232 399 Gene3D - 29 398 IPR012334 -
Mal5g0232 399 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 12 398 - -
Mal5g0232 399 ProSitePatterns Polygalacturonase active site. 241 254 IPR000743 GO:0004650|GO:0005975
Mal5g0232 399 SMART pbh1 184 210 IPR006626 -
Mal5g0232 399 SMART pbh1 328 368 IPR006626 -
Mal5g0232 399 SMART pbh1 211 232 IPR006626 -
Mal5g0232 399 SMART pbh1 234 254 IPR006626 -
Mal5g0232 399 SMART pbh1 92 129 IPR006626 -
Mal5g0232 399 SMART pbh1 294 315 IPR006626 -
Mal5g0232 399 SMART pbh1 264 285 IPR006626 -
Mal5g0232 399 SUPERFAMILY Pectin lyase-like 17 399 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0232 Mal-Chr5 4016648 4018409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0232 13 396 Glycoside Hydrolase AT2G43870 61.818 4.68e-179 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0232 K01184 - gmx:100784002 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0232 5 4016648 4018409 Mal3g1358 3 59290829 59294165 PCT