Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1358 ATGGATTGTATTTTAGGTAACAAGTACATGTTGGTAATTTTATGTATCTTATGCATTACATTGATAGGTTCATCAAATTCAGATCCAACAACTACTTATAATGTAGTTAAATTTGGGGCAAAACCAGATGGAAAAACTGATTCTACTAAACCATTTGTAAATGCTTGGAAATCAGCATGTGCTAGTGTAATTCCTGCCACAATTTATGTGCCAAAAGGGAGGTATTTGTTGAAAAACATTAATTTCCGAGGGCCATGTAAAAGTAAGGTGACATTTCTCAATGGTGGAACTCTTGTGGCTCCTGAAGATTATAGGGTAATTGGAAATTCAGGGTCTTGGATTTTGTTTAATCATGTTGATAGTCTTGTTGTTTCTGGTGGGAAATTGGATGCAAAAGGTGCTGGATTTTGGAATTGCAGAAAATCTGGGAAGAATTGCCCAGTTGGAGCTAGGACAATGTCATTTGACTGGGTGAGTAACGTGGTGGTTAGTGGCATTACTTCAATTAACAGCCAACTAAGTCACCTAGTGATTAACAATTGCAACAATGTTGTTGTGAAAAATGTCAAACTTATTGCACCAGACAAGAGCCCAAACACTGATGGCATTCATGTTCAATACTCAAATAAGGTTACCATAAATGGATGTACAATGAAAACAGGGGATGACTGCATATCCATTGGTGATGCCACTTACAATCTCTTCATGTCCAACATAAAATGTGGTCCTGGTCATGGTGTAAGCATTGGAAGTTTAGGCCAACAAATTGATGAAAAGGGGGTGGAAAATGTGACACTAACGAATGCTATTTTCTATGGATCGGACAATGGGGTTAGGATAAAATCATGGGCCAGGCCCAGCAATGGCTTCGTTAAGAATGTTCTGTTTCAAAACATCATGATGAACAATGTTGAGAATCCCATCATCATTGATCAGAATTACTGTCCCAACAATCAAGGTTGTCCTGGTCAGACTTCAGGAATTAAGATTAGCCAAGTTACTTATAAGAACATTCATGGAAGTTCAGCAACAGCAGAGGCAGTAACATTTGATTGCAGCCCAAGTACACCATGCCAAGGGATCAAATTGGAAGATATAAATTTGAATTACAAAAACAAAGCTGCAACTTCATCATGTAACAATATTGGTGGGACGAGCAGTGGAACACTGGTGCCAGAAAGTTGTCTATTAAATTAA 1197 0.3801 MDCILGNKYMLVILCILCITLIGSSNSDPTTTYNVVKFGAKPDGKTDSTKPFVNAWKSACASVIPATIYVPKGRYLLKNINFRGPCKSKVTFLNGGTLVAPEDYRVIGNSGSWILFNHVDSLVVSGGKLDAKGAGFWNCRKSGKNCPVGARTMSFDWVSNVVVSGITSINSQLSHLVINNCNNVVVKNVKLIAPDKSPNTDGIHVQYSNKVTINGCTMKTGDDCISIGDATYNLFMSNIKCGPGHGVSIGSLGQQIDEKGVENVTLTNAIFYGSDNGVRIKSWARPSNGFVKNVLFQNIMMNNVENPIIIDQNYCPNNQGCPGQTSGIKISQVTYKNIHGSSATAEAVTFDCSPSTPCQGIKLEDINLNYKNKAATSSCNNIGGTSSGTLVPESCLLN* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1358 398 SUPERFAMILY Pectin lyase-like 19 396 IPR011050 -
Mal3g1358 398 ProSitePatterns Polygalacturonase active site. 238 251 IPR000743 GO:0004650|GO:0005975
Mal3g1358 398 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 16 395 - -
Mal3g1358 398 PANTHER - 16 395 - -
Mal3g1358 398 Gene3D - 20 394 IPR012334 -
Mal3g1358 398 SMART pbh1 181 207 IPR006626 -
Mal3g1358 398 SMART pbh1 261 282 IPR006626 -
Mal3g1358 398 SMART pbh1 291 312 IPR006626 -
Mal3g1358 398 SMART pbh1 208 229 IPR006626 -
Mal3g1358 398 Pfam Glycosyl hydrolases family 28 60 383 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1358 Mal-Chr3 59290829 59294165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1358 5 396 Glycoside Hydrolase AT2G43890 60.204 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1358 K01184 - gmx:100797183 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0232 5 4016648 4018409 Mal3g1358 3 59290829 59294165 PCT