Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0011 ATGTCAGGTTTGTATAATCCTCCGAACTTCTCCTCCCCAGTGAGAGCTGCTTCTCCTCAGATCAGACCTAATTCCGACATCATCGACAGTCAGTACTTGTCGGAGTTGCTAGCAGAGTATCAGAAACTTGGACCATTCATCAAAGTCCTTCCCAATTCCAGTCGTCTATTGAATCAAGAAATATTAAGAGTCTCTGGAATGTTATCCAATCAAGGTTTTGGTGACTTTGACAGACTGCGCCATAGAAGCCCTAGTCCTATGGCTTCTTCAAACCTCATGTCAAATGTCACTGGGACAGGGTTGGGTGGATGGAATAGTCTTCAGCAGGAGAGATTATGTGGAACTCCTGGAATGACAATGGACTGGCAAGGCGCGCCTGCAAGTCCTAGCTCATACACTGTTAAAAGGATTTTGCGCTTGGAAATTCCAGTTGATACATACCCTAATTTCAATTTTGTTGGAAGACTTCTGGGACCTAGAGGCAATTCTCTGAAACGGGTAGAAGCTACTACAGGTTGCAGGGTGTTTATTAGAGGAAAGGGATCAATAAAGGATCTAGACAAGGAAGAGAAATTGAGAGGACGACCAGGATATGAGCATCTCAATGAGCCACTCCACATATTGATTGAGGCCGATTTACCTGCTAATATTGTTGACATGAGGCTCAGGCAGGCTCAGGAAATTATAGAAGAATTGCTAAAACCTGTGGATGAGTCAGAGGACTTCATCAAGAGACAGCAGTTGCGGGAATTAGCATTGTTGAATTCAAATTTGAGAGAAGAGAGTCCTGGGCCAAGCGGTAGTGTATCTCCATTTAATTCTAGTGGAATGAAGCGGGCAAAAACTGGTAGATGA 855 0.4398 MSGLYNPPNFSSPVRAASPQIRPNSDIIDSQYLSELLAEYQKLGPFIKVLPNSSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSNVTGTGLGGWNSLQQERLCGTPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDLDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDMRLRQAQEIIEELLKPVDESEDFIKRQQLRELALLNSNLREESPGPSGSVSPFNSSGMKRAKTGR* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0011 284 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 2 284 - -
Mal5g0011 284 SMART kh_6 134 234 IPR004087 GO:0003676
Mal5g0011 284 MobiDBLite consensus disorder prediction 1 20 - -
Mal5g0011 284 CDD SF1_like-KH 139 259 - -
Mal5g0011 284 Pfam Homodimerisation region of STAR domain protein 29 75 IPR032377 -
Mal5g0011 284 PANTHER RNA-BINDING PROTEIN RELATED 2 284 IPR045071 -
Mal5g0011 284 MobiDBLite consensus disorder prediction 256 284 - -
Mal5g0011 284 Gene3D K Homology domain, type 1 25 265 IPR036612 GO:0003723
Mal5g0011 284 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 141 259 IPR036612 GO:0003723
Mal5g0011 284 MobiDBLite consensus disorder prediction 259 284 - -
Mal5g0011 284 Pfam KH domain 151 184 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0011 Mal-Chr5 220590 224268 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0011 K14945 - gmx:100797384 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2527 3 97245222 97251180 Mal5g0011 5 220590 224268 PCT