Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2527 ATGTCAGGTTTGTATAATCAGAACTTCTCACATGCTAGAGCAGCTTCTCCTCAGATTAGAACCAACCCAGAAGTTGACAGTCAGTATTTATCAGAGTTGCTGGCAGAACATCAAAAGCTTGGACCCTTTCTGCAAGTGCTTCCAATATGTAGCCGCCTCTTGAATCAAGAAATAATAAGAGTTTCTGGAATGCTGTCCAACCAAGGTTTTGGTGACTTTGATAGACTGCAGCATAGAAGTCCTAGTCCTATGGCTTCTTCAAACCTCATGTCAAATGTCTCTGGGACAGGAATGGGTGCATGGAATAGTCTTCAACAGGAGAGATTATGTGGACCCCCTGGAATGAATATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCGTTCACTGTTAAGAGAATATTGCGCTTGGAAATTCCAGTTGATACATTCCCCAATTTTAATTTTGTTGGAAGACTTCTGGGACCTAGAGGCAATTCCTTGAAACGGGTAGAAGCTACTACTGGTTGCCGCGTGTATATTAGAGGAAAGGGATCAATAAAAGATCCGGAAAAGGAAGACAAATTACGAGGAAGACCAGGCTATGAGCATCTCAATGAAAATCTACACATATTGATCGAGGCTGATTTACCTGCTAATGTTGTTGAAATAAGGCTCAGACAGGCTCAGGAAATCATAGAAGAACTGCTAAAACCTGTGGACGAGTCACAAGACTTTATTAAGAGGCAGCAGTTGCGCGAATTAGCTCTGCTGAATTCAAATTTCAGAGAAGAGAGTCCAGGGCCAAGTGGCAGTGTGTCCCCATTCAATTCAAGTGGAATGAAACGTGCAAAGCCGGGTCGCTGA 846 0.4338 MSGLYNQNFSHARAASPQIRTNPEVDSQYLSELLAEHQKLGPFLQVLPICSRLLNQEIIRVSGMLSNQGFGDFDRLQHRSPSPMASSNLMSNVSGTGMGAWNSLQQERLCGPPGMNMDWQSAPASPSSFTVKRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEDKLRGRPGYEHLNENLHILIEADLPANVVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNFREESPGPSGSVSPFNSSGMKRAKPGR* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2527 281 SMART kh_6 131 231 IPR004087 GO:0003676
Mal3g2527 281 Pfam Homodimerisation region of STAR domain protein 23 72 IPR032377 -
Mal3g2527 281 CDD SF1_like-KH 136 256 - -
Mal3g2527 281 MobiDBLite consensus disorder prediction 1 20 - -
Mal3g2527 281 MobiDBLite consensus disorder prediction 256 281 - -
Mal3g2527 281 PANTHER RNA-BINDING PROTEIN RELATED 2 281 IPR045071 -
Mal3g2527 281 MobiDBLite consensus disorder prediction 256 272 - -
Mal3g2527 281 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 256 IPR036612 GO:0003723
Mal3g2527 281 Gene3D K Homology domain, type 1 19 262 IPR036612 GO:0003723
Mal3g2527 281 ProSiteProfiles Type-1 KH domain profile. 148 205 - -
Mal3g2527 281 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 2 281 - -
Mal3g2527 281 Pfam KH domain 148 187 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2527 Mal-Chr3 97245222 97251180 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2527 K14945 - gmx:100816420 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2527 3 97245222 97251180 Mal3g2527 3 97245222 97251180 ECH
Mal3g2527 3 97245222 97251180 Mal5g0011 5 220590 224268 PCT