LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal4g1390	ATGACCGAAGTTCTCCATTCTCCACCTCATTTTACTTCATCACAAAGAACATCAACAACTACAACAACACCTTCAACTTCAACTTCTTCTTCTCCTCTCTCTTCATTCTCTTGCCATGCCATTTTTCAACCTCCTTCACAATCACATTTTCCACTTTTTGAGCTACTAGTAACCCTTTTTAGAAAATCATTATTTCTTTTCAAGAATAGTGGCAACAAGGATATTTGCAACATGGACATAAGCCCTCCAACTAACGTGCGCCATGTCGCGCACGTTACTTTTGATAGGTTCAATGGTTTCTTGGGTTTGCCTGATGAATTTGAACCTGATTTTCCTAGAAGGCCTCCTAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCTTATGATTCAAGAGGGAACAGTGTGCCAACAATTCTTCTGTTAATGCAAAGGCACCTCTATGTTCAAGGAGGGTTGCAGGTGGAAGGGATTTTCAGAATTAATGCAGACAATAGTCAAGAGGAACATGTTAGGGATCAATTGAACTTGGGATTGGTTCCTGAAGACATTGACGTACATTGTTTGGCAGGACTAATTAAGGCTTGGTTTAGGGAACTTCCAACCGCTGTTCTGGATTCATTATCACAGGAGCAGGTAATGCAATGCCAGTCTGAGGAAGATTGTATTGAGCTAGTGAGGCATCTACCTCATACTGAAGCTGCACTCTTGGATTGGGCCATCAATCTAATGGCTGATGTTGTCCAACACGAAAATCTCAACAAGATGAACGCACGCAACATTGCCATGGTTTTCGCACCAAACATGACTCAGATGGCAGATCCATTCACTGCATTAATGTATGCAGTTCAAGTGATGAACTTCTTGAAGACACTTATATTAAGGACACTGCGAGAAAGAAAGGATTCAATGGTGGAATCGAATCCTAGATTGAATTTAGAACCTTCTGATGATAATGGACACCGTAGACTTTTCAAGTCGTTTCAGAAAGAAGATTCTGCAGCAGCAGCAGCAGACAATGAAGAGGCTAAAGAAATTTTTGTTTCAGAAAAAACTGTCTTAGAATGTACACCCGAATCACTCGAAAAAAACTCCACAACTGAAGGAGAATCTGGCAGTTTGATAAGCACTTCTGAGAATCCAATTTGCAACGAGGACTTGTATTGTGAGTTTCCGCCGAAAAAAAACACGGGGAAGAACAACAAGTCTGGTCAATCAAGTAGTTCAAATGCTAGAAAAGGGTCCAAAAAGACAAGAGGACAACAACCTGTGATCAATGGAAAAGTATCGGTTGAGAAAAAGGGTATGAGGACTTTGAGCAATACAGATACAAGATCTGACCGAGTTGAAGCTTGGCGGTGA	1377	0.4096	MTEVLHSPPHFTSSQRTSTTTTTPSTSTSSSPLSSFSCHAIFQPPSQSHFPLFELLVTLFRKSLFLFKNSGNKDICNMDISPPTNVRHVAHVTFDRFNGFLGLPDEFEPDFPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYVQGGLQVEGIFRINADNSQEEHVRDQLNLGLVPEDIDVHCLAGLIKAWFRELPTAVLDSLSQEQVMQCQSEEDCIELVRHLPHTEAALLDWAINLMADVVQHENLNKMNARNIAMVFAPNMTQMADPFTALMYAVQVMNFLKTLILRTLRERKDSMVESNPRLNLEPSDDNGHRRLFKSFQKEDSAAAAADNEEAKEIFVSEKTVLECTPESLEKNSTTEGESGSLISTSENPICNEDLYCEFPPKKNTGKNNKSGQSSSSNARKGSKKTRGQQPVINGKVSVEKKGMRTLSNTDTRSDRVEAWR*	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal4g1390	458	Gene3D	CRIB domain	76	109	IPR036936	-
	Mal4g1390	458	SMART	RhoGAP_3	139	302	IPR000198	GO:0007165
	Mal4g1390	458	SMART	PBD_5	80	114	IPR000095	-
	Mal4g1390	458	MobiDBLite	consensus disorder prediction	398	458	-	-
	Mal4g1390	458	SUPERFAMILY	GTPase activation domain, GAP	120	299	IPR008936	GO:0007165
	Mal4g1390	458	Gene3D	Rho GTPase activation protein	110	314	IPR008936	GO:0007165
	Mal4g1390	458	ProSiteProfiles	CRIB domain profile.	80	93	IPR000095	-
	Mal4g1390	458	MobiDBLite	consensus disorder prediction	443	458	-	-
	Mal4g1390	458	Pfam	RhoGAP domain	142	276	IPR000198	GO:0007165
	Mal4g1390	458	CDD	CRIB	78	118	-	-
	Mal4g1390	458	PANTHER	MKIAA1688 PROTEIN	1	458	IPR044785	GO:0005096
	Mal4g1390	458	Pfam	P21-Rho-binding domain	79	112	IPR000095	-
	Mal4g1390	458	MobiDBLite	consensus disorder prediction	401	430	-	-
	Mal4g1390	458	PANTHER	PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN	1	458	-	-
	Mal4g1390	458	MobiDBLite	consensus disorder prediction	363	384	-	-
	Mal4g1390	458	MobiDBLite	consensus disorder prediction	1	31	-	-
	Mal4g1390	458	ProSiteProfiles	Rho GTPase-activating proteins domain profile.	125	310	IPR000198	GO:0007165
	Mal4g1390	458	CDD	RhoGAP	142	298	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal4g1390	Mal-Chr4	20376912	20379912	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal4g1390	-		K20642	ccaj:109798318	577.785

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal4g1390	4	20376912	20379912	Mal4g1390	4	20376912	20379912	ECH
	Mal4g1390	4	20376912	20379912	Mal7g1854	7	65162669	65165347	PCT