Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0414 ATGTGTGTGTGCTTGTTTGTGGTTGAAAGAAAATATGATAGAGCAAACGGGAAAGGGAAGCTTGGAAAGGCTACTTTTTTGGAAGGTATAATTACCTCATTACCAACTTTGGGAGCAGGACAATCTGCATTTAAAATTCATTTTGAATGGGATGATGACATGGGAATTCCTGGAGCATTTTACATCAAGAACTTTATGCAAACTGAGTTTTTCCTTGTGAGTTTGACTCTTGAAGACATTCCAAATCATGGAAGCATCAACTTTGTATGTAACTCTTGGATATATAATGCCAAACACTACAAAATTGACAGAATTTTCTTTGCAAACAAGGCATATCTTCCGAGTGAAACACCAGCTCCATTAGTCCATTATAGAGAAGAAGAATTGAATAATTTAAGAGGAGACGGAACAGGAGAACGCAAAGAATGGGAAAGGATCTATGATTATGATGTCTACAATGATTTAGGAAATCCGGAGAAAGGTGAAAATCATGCTCGTCCAGTTCTTGGAGGGTCCGACACATATCCTTATCCTCGTAGGGGGAGAACCGGCAGAAAACCTAATTCGAAAGATCCTAAAAGTGAGAGTAGGAGTGATTTTGTGTATCTTCCAAGAGATGAAGCTTTTGGTCACTTGAAGTCATCAGACTTTCTTACTTATGGATTAAAAGCAGTATCTCAAAATGTGGTTCCTGCATTAGAGTCTGTTTTCTTTGATATGAATTTCACACCAAATGAGTTTGATAGCTTTGATGAAGTTCATGGATTGTATGAGGGTGGAATTAAGCTGCCAACAGATGTACTTAGCAAGATAAGTCCGTTACCTGTGCTCAAAGAAATCTTTCGAACCGATGGAGAACAGTTCCTCAAGTATCCACCACCTAAAGTACTTCAAGTAAGTAGGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAATGCTTGCCGGAGTAAATCCAAATGTGATCTGTTGTCTTCAGGAGTTCCCTCCGCGAAGCAAGCTCGATAAACAAGTCTATGGTGATCACACCAGTAAAATAACAAAAGAACACCTAGAGCCTAATTTAGAAGGACTCACAGTAGAAGAGGCAATTCAAAACAAGAAATTGTTCCTGCTAGATCATCATGACCCAATAATGCCATATTTAAGGCGAATAAACTCAACTCCAACGAAGGCTTATGCTACTCGAACCATCCTTTTCTTGAGCAGTGACAAAACTTTAAAGCCACTGGCCGTAGAGTTGAGTTTGCCACACCCTGACGGAGATGAACATGGTGCTGTTAGTCATGTTTATCAACCCGCGCTAGAAGGTGTTGAAAGTACTATTTGGTTACTGGCTAAGGCTTATGTAGTTGTGAATGATTCCTGCTATCATCAACTTGTCAGCCATTGGTTAAATACTCATGCAGTTGTTGAACCATTTGTCATAGCAACTAACAGGCATCTGAGTTATCTTCACCCTATTTATAAGCTTTTGTATCCTCACTATCGCGACACAATGAATATAAATTCTCTCGCTCGACAATCTCTGGTCAACGATGGAGGTATCATAGAAAAAACATTTTTGTGGGGAAGATATTCTATGGAAATGTCTTCTAAAGTTTACAAGAATTGGACTCTTCCAGGGCAAGCACTGCCTGCTGATCTTTTAAAAAGAGGAATGGCAATTGAGGATCCATCTTCCCCATGTGGTGTTAAACTTGTGGTAGAGGACTACCCTTATGCTCATGATGGATTAGACATATGGGCTGCAATAAAGACATGGGTCCAAGACTATGTCTCCTTGTACTACACCTCAAATGACATACTTAGACAAGATTCTGAACTCCAAGCTTGGTGGAAAGAAATCGTAGAGGTTGGTCACGGTGATAAGAAAAACGAGCCATGGTGGCCTAAGATGCAAGCTTGTGAAGATCTAGTCGAAGTTTGTACTACTGTCATATGGATTGCTTCAGCTCTTCACGCAGCTGTTAATTTTGGACAGTATCCTTACGGAGGTTTAATATTAAACCGTCCAACTCTTAGTAGGAGATTCATGCCTGAGAAAGGGTCGCCTGAGTACAACGAGCTAGTCAAAAGTCCACAAAAGGCTTACTTGAAGACAATTACACCGAAGTTTCAGACACTTATCGACCTTTCTGTTATAGAAATATTGTCAAGGCATGCTTCTGATGAATTGTACCTTGGGGAGAGAGACAATCCAAACTGGACATCAGATACAAGGGCATTGGAGGCCTTTAAGAAGTTTGGAAACAAGTTGGCAGAAATTGAGAAGAGTCTTGCTCAGAGAAACAATGATGAGAAGCTAAGACACCGTCATGGACCGGTTCAAATGCCTTATACTTTGCTTCATCCTTCTAGTGAGGAAGGATTAACTTTTAGAGGAATTCCTAATAGTATCTCTATCTGA 2412 0.4005 MCVCLFVVERKYDRANGKGKLGKATFLEGIITSLPTLGAGQSAFKIHFEWDDDMGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSINFVCNSWIYNAKHYKIDRIFFANKAYLPSETPAPLVHYREEELNNLRGDGTGERKEWERIYDYDVYNDLGNPEKGENHARPVLGGSDTYPYPRRGRTGRKPNSKDPKSESRSDFVYLPRDEAFGHLKSSDFLTYGLKAVSQNVVPALESVFFDMNFTPNEFDSFDEVHGLYEGGIKLPTDVLSKISPLPVLKEIFRTDGEQFLKYPPPKVLQVSRSAWMTDEEFAREMLAGVNPNVICCLQEFPPRSKLDKQVYGDHTSKITKEHLEPNLEGLTVEEAIQNKKLFLLDHHDPIMPYLRRINSTPTKAYATRTILFLSSDKTLKPLAVELSLPHPDGDEHGAVSHVYQPALEGVESTIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSYLHPIYKLLYPHYRDTMNINSLARQSLVNDGGIIEKTFLWGRYSMEMSSKVYKNWTLPGQALPADLLKRGMAIEDPSSPCGVKLVVEDYPYAHDGLDIWAAIKTWVQDYVSLYYTSNDILRQDSELQAWWKEIVEVGHGDKKNEPWWPKMQACEDLVEVCTTVIWIASALHAAVNFGQYPYGGLILNRPTLSRRFMPEKGSPEYNELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPNWTSDTRALEAFKKFGNKLAEIEKSLAQRNNDEKLRHRHGPVQMPYTLLHPSSEEGLTFRGIPNSISI* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0414 803 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 3 803 - -
Mal4g0414 803 Pfam Lipoxygenase 121 786 IPR013819 GO:0016702|GO:0046872
Mal4g0414 803 Gene3D - 437 802 - -
Mal4g0414 803 ProSiteProfiles PLAT domain profile. 1 108 IPR001024 GO:0005515
Mal4g0414 803 ProSitePatterns Lipoxygenases iron-binding region signature 1. 459 473 IPR020833 GO:0016702|GO:0046872
Mal4g0414 803 Gene3D - 213 301 IPR027433 -
Mal4g0414 803 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 111 803 IPR013819 GO:0016702|GO:0046872
Mal4g0414 803 SUPERFAMILY Lipoxigenase 113 803 IPR036226 -
Mal4g0414 803 Pfam PLAT/LH2 domain 16 107 IPR001024 GO:0005515
Mal4g0414 803 MobiDBLite consensus disorder prediction 157 197 - -
Mal4g0414 803 PRINTS Plant lipoxygenase signature 716 730 IPR001246 GO:0016491
Mal4g0414 803 PRINTS Plant lipoxygenase signature 104 125 IPR001246 GO:0016491
Mal4g0414 803 PRINTS Plant lipoxygenase signature 143 159 IPR001246 GO:0016491
Mal4g0414 803 PRINTS Plant lipoxygenase signature 176 195 IPR001246 GO:0016491
Mal4g0414 803 PRINTS Plant lipoxygenase signature 289 305 IPR001246 GO:0016491
Mal4g0414 803 PRINTS Plant lipoxygenase signature 328 347 IPR001246 GO:0016491
Mal4g0414 803 PRINTS Plant lipoxygenase signature 78 96 IPR001246 GO:0016491
Mal4g0414 803 PRINTS Plant lipoxygenase signature 394 418 IPR001246 GO:0016491
Mal4g0414 803 PRINTS Plant lipoxygenase signature 244 265 IPR001246 GO:0016491
Mal4g0414 803 SMART LH2_4 3 109 IPR001024 GO:0005515
Mal4g0414 803 Gene3D PLAT/LH2 domain 2 112 - -
Mal4g0414 803 Gene3D - 302 436 - -
Mal4g0414 803 ProSitePatterns Lipoxygenases iron-binding region signature 2. 486 496 IPR020834 GO:0016702|GO:0046872
Mal4g0414 803 Gene3D - 113 212 - -
Mal4g0414 803 PRINTS Lipoxygenase signature 479 499 IPR013819 GO:0016702|GO:0046872
Mal4g0414 803 PRINTS Lipoxygenase signature 459 476 IPR013819 GO:0016702|GO:0046872
Mal4g0414 803 PRINTS Lipoxygenase signature 441 458 IPR013819 GO:0016702|GO:0046872
Mal4g0414 803 PANTHER LIPOXYGENASE 3 803 IPR000907 GO:0016702|GO:0046872
Mal4g0414 803 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 4 112 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0414 Mal-Chr4 3567336 3571035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0414 13 803 Acyl Lipid Metabolism Gene Families AT1G55020 61.970 0.0 1039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0414 K15718 - gmx:547869 1401.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0414 4 3567336 3571035 Mal5g0632 5 10132661 10137938 PCT
Mal5g0636 5 10191998 10196828 Mal4g0414 4 3567336 3571035 PCT