Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0257 ATGCCTCTCAGACTCGAACTCAAGCGAAAGTTTGCGCAGAGATCAGAAAGAGTGAAATGTGTGGATCTACATCCAACGGAACCATGGATTCTGGCAAGTTTATACTCTGGTACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCTAAATCTTTTGAGGTCACCGAGTTACCAGTTAGATCAGCCAAGTTTGTTTCACGCAAACAGTGGGTCGTTGCTGGAGCCGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAAAGTATTTGAAGCACATACAGATTACATTAGGTGTGTGGCAGTTCATCCCACCCTTCCTTATGTTCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAAGGCTGGATTTGTACCCAAATATTTGAAGGACATTCTCATTATGTTATGCAAGTGACATTTAATCCTAAAGACACAAATACCTTTGCCAGTGCGTCTCTTGATCGCACTATAAAGATTTGGAATCTTGGCTCTCCTGATCCCAATTTTACATTGGATGCTCACCAAAAAGGAGTGAATTGCGTTGATTACTTTACCGGCGGTGACAAACCTTATCTAATCACCGGTTCTGACGATCACACTGCAAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGATGGTCACACACACAATGTTTCTGCTGTTTGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGTACAGTGCGCATATGGCACTCAACAACTTATAGGCTCGAGAATACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATACTTGAAGAGTTCACGTCGGGTTGTGATTGGATATGATGAAGGAACGATTATGGTCAAACTTGGTCGAGAAGTACCTGTAGCTAGCATGGACAACAGTGGAAAAATTATTTGGGCTAAACATAATGAAATTCAGACTGTCAATATAAAGAGCATAGGAGCAGATTTGGAGGTTGCTGATGGAGAAAGGTTGCCTTTGGCTGTTAAGGAGCTGGGTACTTGTGATCTTTACCCACAAAATTTAAAGCACAATCCTAATGGAAGGTTCGTTGTTGTATGTGGAGATGGTGAGTATATTATATATACTGCATTGGCATGGAGAAACAGATCATTTGGTTCAGCGCTAGAGTTTGCTTGGTCTACGGATGGAGAATATGCTGTCAGAGAAAGTACATCAAAAATTAAAATTTTCAGCAAAAGTTTCCAGGAAAAGAAGAGTGTCCGACCAACATTTTCAGCCGAACGAATATTTGGCGGCACTTTACTGGCGATATGTTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAAGTTGATTTACCGCATTGAAGTCAATGTGAAAAACCTCTACTGGGCTGATAGTGGTGATCTAGTAACAATTGCTGGTGATACATCATTCTACATCCTGAAGTACAATCGTGATGTTGTTGCATCACATATAGATAGTGGAAGATCCGTAGATGAGGAAGGTGTTGAAGATGCTTTTGAGCTCCTTCATGAAATGAATGAACGTGTACGGACGGGTATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGCGGAGAGGTAACTACAATGTTCCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGGGTGTTTTTGATTGACAAAGAATTTAATGTTGTGGGATACACGCTGCTTTTGAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTTGAAAGGGCCAATGAAGTTCTACCATCAATTCCCAAAGAGCATCATAACAGTGTTGCTCGATTCCTGGAATCACGGGGGATGATAGAGGATGCTCTTGAAGTAGCTACGGACCCTGACTACAGATTTGATCTAGCAATACAGCTTGGAAGATTAGAAGTTGCAAAGGGCATTGCAATAGAGGTGCAGAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCTATGTCTTCTGGAAAGTTGCAAATGGCCGAGGAATGTTTGAATCATGCAATGGATTTGAGCGGGTTGTTACTGCTATATTCTTCTTTCGGAGATGCTGAAGGAATTTCAAAACTTGCAACCCTTGCTAAGGAGCAAGGGAAGAACAATGTAGCATTCCTTTGCTTATTTATGTTGGGTAAACTTGAAGACTGCCTTCAACTATTGATAGAAAGCAATCGAATTCCAGAGGCAGCTTTAATGGCTCGATCTTATCTCCCAAGTAAGGTCCCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAGTAAGGTTAATCCAAAAGCTGCTGAATCATTGGCCGATCCTGAGGAATATCCAAATTTGTTTGAAGACTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTGCAGAAACAATGAATGTATACCCTCCAGCAGAGCAGTATATCAACCATGCTGACAAATCACATGTTACCCTTGTTGAAGCTTTCAGAAACATGCAGATTGAAGAGGAGGAGCCTCTTGAGAATGGCGACTCTAATCATGAGTTGACTGAACAAAATGAAGAACACTATACGGAAGAAGAGCACTACACGGAGGAACAAAATGGAGAGGAAGGAAGCCAAGAAGAGGCAGTTGTAGTGGATGCCGAATCAACAGATGGTGCAGTACTAGTAAACGGCAACGAGGCTGACGAAGAGTGGGTGCTTGCACCACATCACTAG 2754 0.4168 MPLRLELKRKFAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVSRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKSSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSIGADLEVADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFAWSTDGEYAVRESTSKIKIFSKSFQEKKSVRPTFSAERIFGGTLLAICSNDFICFYDWAECKLIYRIEVNVKNLYWADSGDLVTIAGDTSFYILKYNRDVVASHIDSGRSVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVFLIDKEFNVVGYTLLLSLIEYKTLVMRGDFERANEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKGIAIEVQSESKWKQLGELAMSSGKLQMAEECLNHAMDLSGLLLLYSSFGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLIESNRIPEAALMARSYLPSKVPEIVAIWRKDLSKVNPKAAESLADPEEYPNLFEDWQVALAVESKAAETMNVYPPAEQYINHADKSHVTLVEAFRNMQIEEEEPLENGDSNHELTEQNEEHYTEEEHYTEEQNGEEGSQEEAVVVDAESTDGAVLVNGNEADEEWVLAPHH* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0257 917 Gene3D - 10 300 IPR015943 GO:0005515
Mal4g0257 917 SMART WD40_4 174 215 IPR001680 GO:0005515
Mal4g0257 917 SMART WD40_4 218 257 IPR001680 GO:0005515
Mal4g0257 917 SMART WD40_4 46 85 IPR001680 GO:0005515
Mal4g0257 917 SMART WD40_4 4 43 IPR001680 GO:0005515
Mal4g0257 917 SMART WD40_4 88 127 IPR001680 GO:0005515
Mal4g0257 917 SMART WD40_4 131 171 IPR001680 GO:0005515
Mal4g0257 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Mal4g0257 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Mal4g0257 917 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Mal4g0257 917 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Mal4g0257 917 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Mal4g0257 917 Pfam WD domain, G-beta repeat 18 43 IPR001680 GO:0005515
Mal4g0257 917 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Mal4g0257 917 PANTHER COATOMER 1 873 - -
Mal4g0257 917 MobiDBLite consensus disorder prediction 847 917 - -
Mal4g0257 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Mal4g0257 917 PANTHER COATOMER SUBUNIT BETA' 1 873 - -
Mal4g0257 917 CDD WD40 17 297 - -
Mal4g0257 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Mal4g0257 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Mal4g0257 917 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Mal4g0257 917 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Mal4g0257 917 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Mal4g0257 917 MobiDBLite consensus disorder prediction 854 880 - -
Mal4g0257 917 Gene3D - 590 798 - -
Mal4g0257 917 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Mal4g0257 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Mal4g0257 917 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Mal4g0257 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Mal4g0257 917 SUPERFAMILY WD40 repeat-like 227 494 IPR036322 GO:0005515
Mal4g0257 917 PIRSF Beta'-COP 2 891 IPR016453 -
Mal4g0257 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0257 Mal-Chr4 1396665 1407461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0257 72 292 Miscellaneous Gene Families AT5G08390 25.339 2.56e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0257 K17302 - gmx:100815780 1723.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0257 4 1396665 1407461 Mal4g0257 4 1396665 1407461 ECH
Mal4g0257 4 1396665 1407461 Mal7g0158 7 3713526 3727261 PCT