Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4868 ATGACTTCTTTGAGCAGAGAATTGGTGTTTCTCATACTCCAATTTCTGGAGGAGGAGAAGTTCAAAGAAACTGTGCACAAGCTCGAGAAAGAATCTGGGTTTTTCTTCAATATGAAATACTTTGAGGAAAAAGTACAGGCCGGTGAATGGGAAGAGGTTGAGAAGTATTTATCAGGCTTTACCAAAGTAGATGATAATAGATACTCCATGAAAATATTCTTTGAAATTAGGAAGCAGAAATATCTGGAAGCACTCGATAGGCAAGACAAGCCAAAGGCTGTTGAGATATTAGTGGGTGATTTGAAAGTATTCTCCACCTTCAATGAGGAACTATACAAAGAAATAACCCAGCTGTTAACCCTTACTAATTTCAGGGAGAACGAGCAGCTGTCCAAGTACGGTGACACCAAAACTGCTCGAGGGATTATGCTGTTAGAGCTGAAAAAGCTCATTGAGGCAAATCCTCTGTTCCGTGAAAAGCTTGTCTTCCCTACTCTGAAATCATCAAGACTGCGGACATTAATCAATCAAAGTTTGAACTGGCAACACCAGCTTTGCAAAAATCCAAGGCCAAACCCAGATATAAAAACTTTATTTATTGATCACTCGTGTACACCTTCCAATGGTCCTCTAGCACCAACACCTGTCAATCTTCCAGTTGCTGCTGTTGCAAAGCCTGTTGCTTATACCTCACTTGGAGTGGGAGCTCATGGCCCCTTTCCACCTGCTGCAGCAACTGCTAATCCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGTTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATACCTGTCCCACAGAATCAAGTGTCTATCTTGAAGCGTCCGAAAACACCTTCAACAACTCCTGGCATGGTTGAGTATCAGAGTGGTGATCATGAACAGCTAATGAAAAGACTTCGGCCTGCTCCTTCTGTGGAGGAGGTTTCTTATCCTTCAGCTCGACAAGCCTCTTGGTCGCTGGATGATCTTCCAAGAACAGTAGCTATGTCTTTGCATCAAGGGTCCTCTGTGACAAGCATGGATTTTCATCCTTCTCACCAAACCTTACTCCTTGTTGGTTCTAATAACGGTGAAATTTCACTTTGGGAACTTGGGATGCGAGAAAGGTTGGTGTCAAAACCATTCAAGATATGGGACATATCAGCATGCTCATTACCATTTCAGGCAGCCGTTGTCAAAGATACACCTTCTGTCAGTCGTGTCACATGGAGCCTTGATGGAAGTTTTGTGGGTGTTGCATTTACTAAACATTTGGTTCACATATACGCTTACAATGGATCAAATGAGCTTGCCCAGCGTATGGAGATTGATGCCCATATTGGTGGTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAACTTTGTATTGTGACTTGTGGAGATGATAAGCTGATAAAGGTGTGGGATTTAACCGGACGAAGACTATTTAACTTTGAAGGGCATGATGCTCCAGTATATTCTATCTGTCCTCATCACAAGGAGAACATTCAGTTTATATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATATGATAATATGGGTTCTAGGGTTGACTATGATGCCCCCGGTCACTGGTGTACTACAATGCTTTACAGTGCTGATGGAACTAGATTATTTTCCTGTGGGACGAGTAAAGATGGAGAGTCATTCCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGGTTCAGAAAGAAATCTGCTGGTGTAGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCTGGTGAAGATGGCCAAATAAAGTTTTGGGACATGGACAATGTTAATCCTCTAACAAGCACTGAAGCAGAGGGTGGACTACAGGGACTTCCGCACTTGAGATTCAATAGGGAAGGAAATCTTCTCGCTGTCAGTACCGCAGATAATGGATTCAAAATTCTCGCTAATGCTAGTGGCCTTAGATCCCTAAGAACAGTTGAAACTCCAGCATTTGAAGCATTGAGGTCTCCTATTGAGTCTGCTGCAAACAAGGTATCTGGTTCCTCTGCTGTTAATGTTAGTCCTGTCAGCTGTAAAGTGGAGAGGAGCTCCCCTGCGAGGCCTTCTCAAATTCTTAATGGAGTTGATCCTGTGGGTAGAAATGCCGAGAAACCTAGGACAGTGGAAGATGTAATGGATAGAACTAAATCATGGCAGCTATCTGAAATTGTAGATCCTGTCCACTGTCGGTTAGTTACCATGCCTGACAGCACAGATACTTCCAGCAAGGTTGTTCGACTTTTATATACAAATTCTGGTGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAATGGTCTCGGAACGATCAGAATCCTAGTGGGAAGGCGACTGCTAGTGTTGTTCCGCAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAATGATGTCTCTGGTGTCAACCTTGAAGAAGCTGTTCCTTGCATTGCACTCTCAAAGAATGATTCATATGTTATGTCTGCATGTGGTGGAAAGGTTTCTTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCCGCCTCTACATATTTGGCTTTCCATCCTCAAGATAACAACATCATAGCCATTGGGATGGAGGATTCAACTATTCACATTTATAATGTTAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCACCAAAAGCGAATTTCTGGTTTAGCTTTTTCAACCAATCTCGGCATCTTGGTTTCATCTGGTGCTGATGCTCATCTTTGTGTGTGGAGCATTGATTCATGGGAGAAAAGAAAATCAGTTCCTATACAACTACCTGTGGGGAAGGCTCCTGTTGGTGAGACTCGTGTACAGTTCCATTCAGACCAACTCCGATTATTGGTATCCCATGAAACTCAGTTAGCAATATATGATGCTTCGAAGATGGAACGCATTAGACAGTGGGTCCCACAAGATGTTCTGCCTGCTCCCATATCATATGCAGCTTATTCTTGCAACAGTCAGTTAATTTTTGCTACATTTTGTGATGGCAACACTGGGGTTTTTGATGCTGACAGCCTGAGACTAAGATGTCGCATTGCACCATCAACATACTTCACAGCAGCGACTTTAAGCGGAAGCCAAGCTGTGTATCCTTTTGTTGTGGCAGCTCATCCACTCGAGCCCAACCAATTTGCCCTTGGATTGACTGATGGGTCAGTGAAAGTGATAGAGCCCAATGAATCGGAGGGAAAGTGGGGATCCAGTCCACCTATGGATAATGGAATGATGAATGGTAGGACAGCATCATCTACAAGCAACCACACACCCGATCAGGGTACACAACGATAA 3390 0.4324 MTSLSRELVFLILQFLEEEKFKETVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFREKLVFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHSCTPSNGPLAPTPVNLPVAAVAKPVAYTSLGVGAHGPFPPAAATANPNALAGWMANASVSSSVQAAVVTASTIPVPQNQVSILKRPKTPSTTPGMVEYQSGDHEQLMKRLRPAPSVEEVSYPSARQASWSLDDLPRTVAMSLHQGSSVTSMDFHPSHQTLLLVGSNNGEISLWELGMRERLVSKPFKIWDISACSLPFQAAVVKDTPSVSRVTWSLDGSFVGVAFTKHLVHIYAYNGSNELAQRMEIDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDNVNPLTSTEAEGGLQGLPHLRFNREGNLLAVSTADNGFKILANASGLRSLRTVETPAFEALRSPIESAANKVSGSSAVNVSPVSCKVERSSPARPSQILNGVDPVGRNAEKPRTVEDVMDRTKSWQLSEIVDPVHCRLVTMPDSTDTSSKVVRLLYTNSGAGLLALGSNGVQKLWKWSRNDQNPSGKATASVVPQHWQPNSGLLMTNDVSGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTYLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRISGLAFSTNLGILVSSGADAHLCVWSIDSWEKRKSVPIQLPVGKAPVGETRVQFHSDQLRLLVSHETQLAIYDASKMERIRQWVPQDVLPAPISYAAYSCNSQLIFATFCDGNTGVFDADSLRLRCRIAPSTYFTAATLSGSQAVYPFVVAAHPLEPNQFALGLTDGSVKVIEPNESEGKWGSSPPMDNGMMNGRTASSTSNHTPDQGTQR* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4868 1129 PANTHER PROTEIN, PUTATIVE-RELATED 1 1125 - -
Mal3g4868 1129 MobiDBLite consensus disorder prediction 706 726 - -
Mal3g4868 1129 SMART ctlh 34 92 IPR006595 -
Mal3g4868 1129 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Mal3g4868 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Mal3g4868 1129 MobiDBLite consensus disorder prediction 1092 1129 - -
Mal3g4868 1129 MobiDBLite consensus disorder prediction 1107 1129 - -
Mal3g4868 1129 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 433 949 IPR011047 -
Mal3g4868 1129 Gene3D - 321 562 IPR015943 GO:0005515
Mal3g4868 1129 Gene3D - 762 1097 IPR015943 GO:0005515
Mal3g4868 1129 SUPERFAMILY Tricorn protease domain 2 331 438 - -
Mal3g4868 1129 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Mal3g4868 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 484 IPR001680 GO:0005515
Mal3g4868 1129 SUPERFAMILY WD40 repeat-like 767 1089 IPR036322 GO:0005515
Mal3g4868 1129 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1125 IPR027728 GO:0006355
Mal3g4868 1129 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Mal3g4868 1129 SMART Lish 4 36 IPR006594 GO:0005515
Mal3g4868 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 385 IPR001680 GO:0005515
Mal3g4868 1129 Pfam WD domain, G-beta repeat 345 375 IPR001680 GO:0005515
Mal3g4868 1129 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Mal3g4868 1129 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Mal3g4868 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Mal3g4868 1129 SMART WD40_4 862 902 IPR001680 GO:0005515
Mal3g4868 1129 SMART WD40_4 337 376 IPR001680 GO:0005515
Mal3g4868 1129 SMART WD40_4 529 572 IPR001680 GO:0005515
Mal3g4868 1129 SMART WD40_4 823 859 IPR001680 GO:0005515
Mal3g4868 1129 SMART WD40_4 905 944 IPR001680 GO:0005515
Mal3g4868 1129 SMART WD40_4 575 615 IPR001680 GO:0005515
Mal3g4868 1129 SMART WD40_4 442 483 IPR001680 GO:0005515
Mal3g4868 1129 SMART WD40_4 485 526 IPR001680 GO:0005515
Mal3g4868 1129 SMART WD40_4 401 436 IPR001680 GO:0005515
Mal3g4868 1129 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Mal3g4868 1129 SMART WD40_4 1050 1091 IPR001680 GO:0005515
Mal3g4868 1129 Gene3D - 563 672 IPR015943 GO:0005515
Mal3g4868 1129 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4868 Mal-Chr3 128733375 128741609 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4868 - - gmx:100808421 2026.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4868 3 128733375 128741609 Mal3g4868 3 128733375 128741609 ECH
Mal3g4868 3 128733375 128741609 Mal1g1482 1 19268254 19276817 PCT