Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1482 ATGACTTCTTTGAGTAGAGAATTGGTGTTTCTTATTCTTCAGTTTCTTGATGAGGAGAAGTTCAAGGAATCTGTGCACAAGCTCGAGAAAGAATCAGGATTCTTTTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGTGAATGGGATGAAGTTGAAAAGTATTTAGCAGGGTTTACCAAAGTTGACGATAATAGATACTCAATGAAAATATTCTTTGAAATTAGGAAGCAGAAATATCTGGAAGCACTTGATCGGCAAGACAAGCCAAAGGCTGTAGAGATATTAGTTGGTGATTTAAAAGTGTTCTCGACCTTCAATGAGGAACTATACAAAGAAATCACCCAGCTGTTGATTCTTAATAATTTCAGGGAGAACGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGTATTATGTTGATCGAACTAAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTGCCTTTCCGACGCTCAAGTCATCAAGACTAAGGACTTTAATCAATCAGAGTCTGAACTGGCAGCACCAGCTTTGTAAAAACCCAAGGCCAAACCCAGATATAAAGACTTTATTTATAGATCACACTTGTTCACCTTCTAATGGTCCGCTGGCACCTACACCTGTCAATCTTCCAATTTCTGCAGTTGCAAAGCCTGTTGCTTATACTTCACTTGGAGCTCATGGTCCCTTCCCTCCTACTGTCGCAACTGCAAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTTCAAGCAGCTGTTGTCACATCGTCAACCATGCCGGTCCCTCAGAATCAAGTATCTATCTTGAAACGTCCTAGGACACCTCCGACAACTCCTGGGATTGTTGATTATCAGAATGCTGATCATGAACAGTTAATGAAAAGGCTTCGTCCAGGTCATTCCGTGGAGGAGGTTTCCTATCCCGTGGCTCGACAAGCCTCTTGGTCTCTAGATGATCTCCCAAGAACAGTGGCCATGACTTTGCATCAAGGGTCCTCCGTGACAAGCATGGATTTTCATCCTTCACACCACACCCTACTTCTTGTTGGTTCTAATAATGGTGAAATAACCCTCTGGGAACTCAGTTTACGAGAAAGGTTGGTCTCAAAGCCGTTCAAGATATGGGATGTGTCGGCATGCTCATTACCATTTCAGGCAGCTGCAGTCAAGGATGCGCCTATTTCTGTCAGTCGTGTCACATGGAGCCCTGATGGAAATTATGTGGGTGTTGCGTTTACTAAACATCTGATTCATTTATATAACAACACCGGGTCAAATGAGCTAGCCCAGCGAATAGAGATTGATGCCCATGTTGGTGGTGTGAATGATTTGTCATTTGCTCTTCCAAATAAAACCCAGTTGTGCATTGTAACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTAAATGGACGAAGACTGTATACCTTTGAGGGGCACGGGGCACCTGTCTATTCAGTCTGTCCTCATCACAAAGAGAACATTCAGTTCATATTTTCAACAGCCATTGATGGGAAAATAAAGGCCTGGTTATACGATAGCATGGGTTCTAGGGTTGACTATGATGCTCCTGGTCATTGGTGTACTACAATGCTTTACAGTGCCGACGGAAGTAGATTGTTTTCTTGCGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACGTACAATGGATTCAGAAAGAAATCTTCTGGCGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGTTGCAGGTGAAGACGGCCAAGTGAAGTTTTGGGACATGGACAATATTAATCTTCTAACAAGCACTGATGCAGATGGTGGATTACAGGTCCTTCCACGCTTGAAATTCAATAAGGAAGGAAATATTCTCGCTGTTACTACTGTGGACAATGGATTCAAGATACTGGCAAATGCTACTGGTCTTAGATCCTTAAGAACAATTGAGACTCCAGCATTTGAAGCATTGAGGTCACCCATTGAATCTTCTGCAATCAAGGTATCTGGCTCTTCTACTGTTAATGTTAGTCCTGTCAACTGTAAAGTGGAAAGAAGCTCTCCTGTCAGGCCGCCTCCAATTCTTAATGGAGTTGATCCTATGAGTCGAAGTGTAGAGAAATCAAGAGCTGTGGAAGATGCAACAGATAGAACTAAATCATGGCAATTGACTGAAATTCTGGATCCTGCCCAATGTCGGTCAGTTACCATGCCGGACAACACAGACTCTTTCAGCAAGGTTGTACGACTTCTATATACAAATTCTGCTGTTGGTATTTTGGCCCTTGGTTCAAATGGTGTCCAGAAGCTTTGGAAATGGGCTCGTAATGAACAGAATCCTACTGGGAAGGCAACTGCCAGTGTTGTTCCACAACGTTGGCAACCCAGCAGTGGTCTTCTTATGACCAATGATATTGCGGGTGTCAACCTTGAAGAAGCAGTCCCTTGCATTGCACTCTCAAAAAATGACTCATATGTTATGTCTGCCTGTGGTGGAAAAGTTTCACTATTTAACATGATGACGTTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCCTCTACTTTCCTAGCTTTCCATCCTCAGGATAATAACATTATATCCATTGGGATGGAGGATTCAACCATTCACATCTATAATGTTAGAGTGGATGAGGTGAAATCGAAATTGAAGGGTCACCAGAGACGAATTACTGGTTTAGCCTTTTCAACCAATCTTAATATCCTGGTTTCTTCTGGTGCTGATGCTCAATTGTGTGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCAATTCCAATTCAACTACCTGTGGGAAAGTCACCTGTTGGTGATACACGTGTTCAGTTCCATTCTGACCAACTTCGCTTATTGGTAGTCCATGAGACTCAATTGGCAATATATGATGCCTCCAAGATGGAACGTATTCGGCAGTGGGTTCCCCAAGATGCTCTGCCTGCTCCCATATCATATGCAGCGTATTCCTGCAACAGTCAGTTAATATATGCTTCATTTTGTGATGCAAACATTGGGGTTTTTGATGCTGATAGCTTGAGATTAAGATGTCGTATTGCACCACCAATATGCTTGTCATCAGCCGCTTTAAGTAGAAGCCAAGCTGTGTATCCTCTTGTGATTGCGGCTCATCCACTAGAACCTAACCAGTTTGCTGTTGGGTTGAGTGATGGGTCTGTCAAAGTGATAGAACCGAGTGAATCAGAGGGTAAGTGGGGATCTTCTCCGCCTATGGACAACGGAATCTTGAATGGTAAGGCCCCATCGCCATCTACAACTAGCAACCACACAGCGGATCAGGCCCAACGATAA 3393 0.4309 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWDEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLILNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVAYTSLGAHGPFPPTVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRTPPTTPGIVDYQNADHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHHTLLLVGSNNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGNYVGVAFTKHLIHLYNNTGSNELAQRIEIDAHVGGVNDLSFALPNKTQLCIVTCGDDKLIKVWDLNGRRLYTFEGHGAPVYSVCPHHKENIQFIFSTAIDGKIKAWLYDSMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSSGVVQFDTTQNRFLVAGEDGQVKFWDMDNINLLTSTDADGGLQVLPRLKFNKEGNILAVTTVDNGFKILANATGLRSLRTIETPAFEALRSPIESSAIKVSGSSTVNVSPVNCKVERSSPVRPPPILNGVDPMSRSVEKSRAVEDATDRTKSWQLTEILDPAQCRSVTMPDNTDSFSKVVRLLYTNSAVGILALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPSSGLLMTNDIAGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIISIGMEDSTIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSIPIQLPVGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDALPAPISYAAYSCNSQLIYASFCDANIGVFDADSLRLRCRIAPPICLSSAALSRSQAVYPLVIAAHPLEPNQFAVGLSDGSVKVIEPSESEGKWGSSPPMDNGILNGKAPSPSTTSNHTADQAQR* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1482 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Mal1g1482 1130 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Mal1g1482 1130 Pfam WD domain, G-beta repeat 448 483 IPR001680 GO:0005515
Mal1g1482 1130 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 362 949 IPR011047 -
Mal1g1482 1130 SMART Lish 4 36 IPR006594 GO:0005515
Mal1g1482 1130 MobiDBLite consensus disorder prediction 1112 1130 - -
Mal1g1482 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Mal1g1482 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Mal1g1482 1130 PANTHER PROTEIN, PUTATIVE-RELATED 1 1130 - -
Mal1g1482 1130 MobiDBLite consensus disorder prediction 1091 1130 - -
Mal1g1482 1130 Gene3D - 829 1105 IPR015943 GO:0005515
Mal1g1482 1130 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 894 1094 IPR011048 -
Mal1g1482 1130 MobiDBLite consensus disorder prediction 704 734 - -
Mal1g1482 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Mal1g1482 1130 Gene3D - 325 562 IPR015943 GO:0005515
Mal1g1482 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Mal1g1482 1130 Gene3D - 563 676 IPR015943 GO:0005515
Mal1g1482 1130 SMART WD40_4 817 859 IPR001680 GO:0005515
Mal1g1482 1130 SMART WD40_4 862 902 IPR001680 GO:0005515
Mal1g1482 1130 SMART WD40_4 575 615 IPR001680 GO:0005515
Mal1g1482 1130 SMART WD40_4 905 944 IPR001680 GO:0005515
Mal1g1482 1130 SMART WD40_4 397 435 IPR001680 GO:0005515
Mal1g1482 1130 SMART WD40_4 335 374 IPR001680 GO:0005515
Mal1g1482 1130 SMART WD40_4 485 526 IPR001680 GO:0005515
Mal1g1482 1130 SMART WD40_4 1057 1091 IPR001680 GO:0005515
Mal1g1482 1130 SMART WD40_4 994 1036 IPR001680 GO:0005515
Mal1g1482 1130 SMART WD40_4 441 483 IPR001680 GO:0005515
Mal1g1482 1130 SMART WD40_4 529 572 IPR001680 GO:0005515
Mal1g1482 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Mal1g1482 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Mal1g1482 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 485 IPR001680 GO:0005515
Mal1g1482 1130 SMART ctlh 34 92 IPR006595 -
Mal1g1482 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1130 IPR027728 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1482 Mal-Chr1 19268254 19276817 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1482 - - gmx:100793575 2091.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1482 1 19268254 19276817 Mal1g1482 1 19268254 19276817 ECH
Mal3g4868 3 128733375 128741609 Mal1g1482 1 19268254 19276817 PCT