Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4758 ATGAGGAGGCCTTCAACACTTGTGGATGTGTTTCTGGTACTTGCATTGTTCTGTTGTAGCTCATGGAAAGTGTGGAGCAGCACACTTTGCAAAGAGACAAACTTGGACAAAGTTAGGCCTCATAGTGTTAGTATTACTGAATTTGGCGCTGTTGGCGATGGGATCACTCTCAACACAAAAGCGTTTCAGAATGCGATTTTCTACCTAAATTCTTTTTCAGACAAAGGTGGAGCCAAGCTTTTTGTTCCATCCGGTCAGTGGTTAACCGGTAGTTTTGATCTCATTAGCCACCTAACTTTGTGGTTGGACAAGGATGCAATAATTCTTGGATCAACGAACTCTGAGGATTGGCCGGTTATTGATCCTCTACCGTCTTATGGGCGAGGAAGGGAGTTGCCGGGTGGAAGGCATAGGAGTCTCATCTATGGGTGCAATTTGACTGATGTCATCATAACAGGTAATGAGGGGATTATCGATGGTCAAGGAAGTATCTGGTGGAGCAAGTTTAGGAACAAAACTCTGGATTATACGCGTCCACATTTGGTAGAATTGATGAATTCAACCGGGATTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACAATTCATCCTGTATATTGCAGCCAAGTTACAGTGAAGAATGTCACGATCCTTGCTCCTCTTGATTCACCAAATACAGATGGTATTGATCCAGACTCTTCTGATGATGTGTGTATTGAAGACTGTTATATAAGCACCGGTGATGATCTGATTGCCATCAAAAGCGGGTGGGATGAATATGGAATTGCATTTGGTCGTCCGAGTACAAATATCATCATCCACAGGCTTGTTGGGAAAACTCACACAAGCGCAGGGATAGCTATTGGAAGTGAGATGTCGGGCGGGGTATCATATGTGCGTGCTGAAGATATTCACTTTTATGATTCATATACTGCAATCAGAATAAAGACTTCACCTGGAAGAGGTGGTTATGTTAGAAACATCTATGTCTCTAACATGACCTTGGCCAATGTTGATATCGCTATTCGGTTCACTGGCTCATATGGTGATCATCCAGATGATGCTTATGACCCAAATGCTCTACCGGTAATCGAAAAGATTACAATCGAGGATGTGATAGGAGAAAATATAACAAAAGCAGGTCTTATAGAAGGTATAGAAGGTGACAATTTCGTCGACATATGCTTATCAAACATCACCCTTAATGTGAGATCAAACTATCCATGGAACTGCTCTAATGTTAGAGGATACTCTGACATGGTTTTTCCGGAAGCTTGTGAGCCGCTCAAGGAGAGGATATTCCCCGACCATTGTTCGGACTGTTACTATTTGTCGAATCACCGACAAAGTTCAAATAATCAAAACAGAGGACAAAAATTTCACTTGACATAA 1401 0.4176 MRRPSTLVDVFLVLALFCCSSWKVWSSTLCKETNLDKVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFSDKGGAKLFVPSGQWLTGSFDLISHLTLWLDKDAIILGSTNSEDWPVIDPLPSYGRGRELPGGRHRSLIYGCNLTDVIITGNEGIIDGQGSIWWSKFRNKTLDYTRPHLVELMNSTGILISNLTFLNSPFWTIHPVYCSQVTVKNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIIIHRLVGKTHTSAGIAIGSEMSGGVSYVRAEDIHFYDSYTAIRIKTSPGRGGYVRNIYVSNMTLANVDIAIRFTGSYGDHPDDAYDPNALPVIEKITIEDVIGENITKAGLIEGIEGDNFVDICLSNITLNVRSNYPWNCSNVRGYSDMVFPEACEPLKERIFPDHCSDCYYLSNHRQSSNNQNRGQKFHLT* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4758 466 Pfam Glycosyl hydrolases family 28 137 418 IPR000743 GO:0004650|GO:0005975
Mal3g4758 466 SMART pbh1 210 236 IPR006626 -
Mal3g4758 466 SMART pbh1 328 349 IPR006626 -
Mal3g4758 466 SMART pbh1 299 320 IPR006626 -
Mal3g4758 466 SMART pbh1 271 293 IPR006626 -
Mal3g4758 466 SMART pbh1 237 269 IPR006626 -
Mal3g4758 466 Gene3D - 21 423 IPR012334 -
Mal3g4758 466 SUPERFAMILY Pectin lyase-like 35 432 IPR011050 -
Mal3g4758 466 PANTHER OS07G0245200 PROTEIN 7 448 - -
Mal3g4758 466 PANTHER PECTIN LYASE-RELATED 7 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4758 Mal-Chr3 127581975 127584806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4758 1 459 Glycoside Hydrolase AT3G62110 69.099 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4758 - - gmx:100782602 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4758 3 127581975 127584806 Mal1g1602 1 20896490 20901532 PCT